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License: MIT License
stringMLST datasets
License: MIT License
pip's cache directory contains malformed HTTP cache objects
Fixes:
pip install
commandThe build environment for the datasets was broken during an upgrade to anaconda3
Hi,
If you want to run stringMLST.py --getMLST -P datasets/ --species all
I get an error because of misspelling Stapylococcus_hominis.zip instead of Staphylococcus_hominis.zip in the datasets folder.
Thanks for fixing!
Marko
Dear developers,
I am trying to characterize a strain of Leptospira with Leptospira spp dataset 1, but when I run the prediction I got the following error:
ERROR: gene names in config file do not match gene names in profile file
Checking config and profile files, I noticed that profile contains less columns than the number of genes included in the associated config, and moreover it seems to be identical to the profile file of Leptospira spp dataset 3.
Could you please check if there is any error in this profile file and eventually provide an updated version?
Thank you in advance!
Best Regards
Loris
A pubMLST process has gone awry and clobbered the Pasteurella multocida#1 database files and left them empty. Disable Pasteurella multocida#1 in stringMLST for now, rebuild databases
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