Comments (2)
Hi, just to add to this when I import the files separately using read_qza I can see the negative is in there but it is just when I use the qza_to_phyloseq that it does not seem to recognize it as a sample. Is there a way to just read the files in using read_qza then combining these files into a phyloseq object?
Thanks
A
from qiime2r.
Do the negative controls have reads assigned to them? I wonder if phyloseq is stripping them out.
from qiime2r.
Related Issues (20)
- taxa_barplot: Argument ntoplot > 10 changes the color pallete HOT 1
- Error in read_yaml...could not find function "read_yaml"
- Feature request: support for importing q2-longitudinal artifacts HOT 3
- Newer version of dplyr no longer works with example HOT 1
- Exporting R objects to qza files
- qiime2 to Phyloseq HOT 1
- taxa_barplot plots all taxa as remainder when a sample has 0 reads
- close HOT 1
- summarize_taxa HOT 1
- error with installing qiime2R HOT 4
- Unable to Install qiime2R HOT 3
- taxa_barplot and taxa_heatmap ordering x-axis by alphabetical order HOT 1
- Problem installing qiime2R in R 4.3.1 HOT 1
- QZA to FASTA? HOT 1
- Phyloseq Object have 0 in OTU table HOT 2
- How to import nucleotide sequences [refseq() or DNAStringSet] using qiime2R
- taxa_heatmap() sample order
- Support for TreeSummarizedExperiment container? HOT 7
- OTU with sequence instead of unique identifier as row names? HOT 1
- `Error in file(con, 'r") : cannot open the connection` when user inputs incorrect filename into metadata parameter in `qza_to_phyloseq`` HOT 1
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from qiime2r.