Comments (3)
It sounds like the problem is in the installation of all the dependencies. Can you send your sessionInfo()
?
from qiime2r.
It sounds like the problem is in the installation of all the dependencies. Can you send your
sessionInfo()
?
R version 4.0.4 (2021-02-15)
Platform: x86_64-apple-darwin17.0 (64-bit)
Running under: macOS 13.4
Matrix products: default
LAPACK: /Library/Frameworks/R.framework/Versions/4.0/Resources/lib/libRlapack.dylib
locale:
[1] en_US.UTF-8/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
attached base packages:
[1] stats graphics grDevices utils datasets methods base
loaded via a namespace (and not attached):
[1] Rcpp_1.0.11 urlchecker_1.0.1 compiler_4.0.4 later_1.3.1 remotes_2.4.2.1
[6] prettyunits_1.1.1 profvis_0.3.8 tools_4.0.4 digest_0.6.33 pkgbuild_1.4.2
[11] pkgload_1.3.2.1 evaluate_0.21 memoise_2.0.1 lifecycle_1.0.3 rlang_1.1.1
[16] shiny_1.7.4.1 cli_3.6.1 rstudioapi_0.15.0 curl_5.0.2 yaml_2.3.7
[21] xfun_0.40 fastmap_1.1.1 stringr_1.5.0 knitr_1.44 desc_1.4.2
[26] fs_1.6.3 htmlwidgets_1.6.2 vctrs_0.6.3 devtools_2.4.5 rprojroot_2.0.3
[31] glue_1.6.2 R6_2.5.1 processx_3.8.2 rmarkdown_2.25 sessioninfo_1.2.2
[36] callr_3.7.3 purrr_1.0.2 magrittr_2.0.3 usethis_2.2.2 promises_1.2.1
[41] ps_1.7.5 ellipsis_0.3.2 htmltools_0.5.6 mime_0.12 xtable_1.8-4
[46] httpuv_1.6.11 stringi_1.7.5 miniUI_0.1.1.1 cachem_1.0.8 crayon_1.5.2
from qiime2r.
Was able to circle back to this and figured it out. I can't remember which dependency was giving me issues within the qiime2R install this time (it may have been the same one listed above), but I just individually installed the one package that was giving me the problem. You'd actually recommended this to someone else who was having a similar issue in a QIIME forum - thank you!
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