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Comments (4)

jbisanz avatar jbisanz commented on August 11, 2024 1

Could you post your session info? You could also try installing from source:

#see here for more info https://forum.qiime2.org/t/problems-installing-qiime2r/11999/6
download.file("https://github.com/jbisanz/qiime2R/archive/master.zip", "source.zip")
unzip("source.zip")
install.packages("qiime2R-master", repos = NULL, type="source")

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mjbug avatar mjbug commented on August 11, 2024

Here is my session info

R version 4.2.3 (2023-03-15 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 22621)

Matrix products: default

locale:
[1] LC_COLLATE=English_United States.utf8  LC_CTYPE=English_United States.utf8   
[3] LC_MONETARY=English_United States.utf8 LC_NUMERIC=C                          
[5] LC_TIME=English_United States.utf8    

attached base packages:
[1] stats     graphics  grDevices utils     datasets  methods   base     

other attached packages:
[1] remotes_2.4.2

loaded via a namespace (and not attached):
[1] compiler_4.2.3  tools_4.2.3     rstudioapi_0.14 curl_5.0.1

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mjbug avatar mjbug commented on August 11, 2024

Just tried your previous suggestion

download.file("https://github.com/jbisanz/qiime2R/archive/master.zip", "source.zip")
unzip("source.zip")
install.packages("qiime2R-master", repos = NULL, type="source")

and received this error

ERROR: dependencies 'Biostrings', 'rhdf5', 'zCompositions', 'phyloseq' are not available for package 'qiime2R'
* removing 'C:/Users/bugsj/AppData/Local/R/win-library/4.2/qiime2R'
Warning in install.packages :
  installation of package ‘qiime2R-master’ had non-zero exit status

Should I download the above dependencies and re-try?

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jbisanz avatar jbisanz commented on August 11, 2024

Yes, when in doubt, manually install the dependencies. Not sure why you would have this problem, could be something about where they are being installed on windows.

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