How to import raw illumina files about pirate HOT 3 CLOSED

Dear Jack,

Thank you for your message,

Before to copy-past your Illumina data, you have to tranfer your data from your local computer to the virtual machine.
You can realise this task through various ways, for exemple you can transfer:

• with a usb key
• with ftp
• with internet (cloud)

Once your data is on the virtual machine you can copy-past in to the directory
"[email protected]".

I hope this will help you,

Best regards,

Jérémy

from pirate.

I have tried to connect to the VM using FTP, but I can't seem to get it to work. Do you have any instructions?

from pirate.

Dear pwkooij,

1)Firsly check your Network Configuration in VirtualBox for the PiRATE-VM

Select Global Settings from the File menu --> Select the Network item in the list
-In "attached to" check that the "Bridged Network" is selected
-Go in "advanced" (blue arrow)
-Check that for the Promiscuous mode "Allow All"
-Cable connected: check

2) Start your PiRATE-VM

2.a-just in case restart the proftdp:

open a konsol and run:
sudo /etc/init.d/proftpd reload
sudo /etc/init.d/proftpd restart

( the admin pasword is jeremy07 )

2.b-Obtain your IP adress
open a konsol and run the ifconfig command (https://www.computerhope.com/unix/uifconfi.htm)

Example:

eth0 Link encap:Ethernet HWaddr 09:00:12:90:e3:e5
inet addr:192.168.1.29 Bcast:192.168.1.255 Mask:255.255.255.0
inet6 addr: fe80::a00:27ff:fe70:e3f5/64 Scope:Link
UP BROADCAST RUNNING MULTICAST MTU:1500 Metric:1
RX packets:54071 errors:1 dropped:0 overruns:0 frame:0
TX packets:48515 errors:0 dropped:0 overruns:0 carrier:0
collisions:0 txqueuelen:1000
RX bytes:22009423 (20.9 MiB) TX bytes:25690847 (24.5 MiB)

this will show you the "inet adr:" which is your ip adress

Then go back to your physical machine

3) Open Filezilla and connect you to the PiRATE-VM

Host: you IP adress login: jeremy password: jeremy07 Port: 21

I just re-checked this method this morning and it works for me,

Best!

Jeremy

from pirate.