Comments (4)
Thanks for the update! I look forward to using it with Docker.
from pirate.
Dear Dr Chapman,
Sorry for my delay,
We are still working on the Docker version, it is a bit time consuming because everything have to be re-installed on the Docker version and some tools have also to be updated.
This is a side project for me and my colleagues working on it, and Covid delayed it a lot...
We expect to finish it at the begining of 2021.
Best regards,
Jeremy
from pirate.
Hi! I would like to know if a docker version is now available somewhere. We also would be interested in installing the pipeline on our computing infrastructure as docker or singularity container. Regards.
from pirate.
Dear Loraine, thank you for your message.
Unfortunalty, Ifremer worked on the Docker version since last year, but according to my latest news, it is in standbye because of the dificulty of managing REPET scheduler. I am not sure if they will overcome this issue or if they still work on it.
It will probably never come alive unfortunatly.
Best regards
from pirate.
Related Issues (20)
- Weight below or more than 1 GO HOT 1
- PiRATE DEFAULT DATABANKS HOT 2
- RNA-seq data analysis HOT 1
- Single Transposable elements library HOT 2
- RepeatMasker encountered a line in an unrecognized format. HOT 1
- Run PiRATE without using Illumina raw data HOT 1
- TEannot query HOT 3
- Script for eliminating redudancy in CD-Hit est HOT 1
- Encountered error in Hmmer HOT 2
- Statistics summary HOT 3
- TE content (%) HOT 3
- HHH HOT 1
- PASTEC Classification HOT 1
- error in PASTEC HOT 8
- TEs classified as potential chimeric HOT 4
- MCL HOT 2
- TEannot Output HOT 1
- PASTEC error
- Slow download speed for PiRATE-VM file
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