Comments (3)
Dear Pepijn,
The author of REPET (TEdenovo, PASTEC, TEannot) advised me to do a second run of TEannot using the Full length copy (FLC).
The sequences in the Full length copy, become your final TE library for the TEannotation.
This helps to reduce the redundancy of the reference TE sequences.
Cheers,
Jeremy
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ok, thanks for the answer, Jeremy, much appreciated!
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Related Issues (20)
- Weight below or more than 1 GO HOT 1
- PiRATE DEFAULT DATABANKS HOT 2
- RNA-seq data analysis HOT 1
- Single Transposable elements library HOT 2
- Progress with Docker version HOT 4
- RepeatMasker encountered a line in an unrecognized format. HOT 1
- Run PiRATE without using Illumina raw data HOT 1
- Script for eliminating redudancy in CD-Hit est HOT 1
- Encountered error in Hmmer HOT 2
- Statistics summary HOT 3
- TE content (%) HOT 3
- HHH HOT 1
- PASTEC Classification HOT 1
- error in PASTEC HOT 8
- TEs classified as potential chimeric HOT 4
- MCL HOT 2
- TEannot Output HOT 1
- PASTEC error
- Slow download speed for PiRATE-VM file
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