Comments (2)
JBerthelier
commented on July 29, 2024
Dear pwkooij,
Sevreral users reported me errors with helsearch.
Because this tool seems to be very capricious and generate numerous false positifs,
it will be removed in the new Pirate version.
I advise you to not use it in your analyses.
If there is Helitron in the genome you are studying, they should be found by repeatitiveness-based approach tools such as TEdenovo or Repeatscout.
Best
Jeremy
from pirate.
pwkooij
commented on July 29, 2024
Hi Jeremy
Thanks for your response! I will skip the analysis.
Cheers
Pepijn
from pirate.
Related Issues (20)
- Weight below or more than 1 GO HOT 1
- PiRATE DEFAULT DATABANKS HOT 2
- RNA-seq data analysis HOT 1
- Single Transposable elements library HOT 2
- Progress with Docker version HOT 4
- RepeatMasker encountered a line in an unrecognized format. HOT 1
- Run PiRATE without using Illumina raw data HOT 1
- TEannot query HOT 3
- Script for eliminating redudancy in CD-Hit est HOT 1
- Encountered error in Hmmer HOT 2
- Statistics summary HOT 3
- TE content (%) HOT 3
- HHH HOT 1
- PASTEC Classification HOT 1
- error in PASTEC HOT 8
- TEs classified as potential chimeric HOT 4
- MCL HOT 2
- TEannot Output HOT 1
- PASTEC error
- Slow download speed for PiRATE-VM file
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