Problem running on R about too-many-cells HOT 6 CLOSED

Those commands demonstrate an example use case with mat.csv and labels.csv files. You probably do not have those files, so nothing is being read into R.

from too-many-cells.

I have the files and I get this

mat
6 x 6 sparse Matrix of class "dgCMatrix"
cell1 cell2 cell3 cell4 cell5 cell6
feature1 1 3 2 . . 8
feature2 8 6 6 . . 10
feature3 . . . 10 8 .
feature4 . . . 4 5 .
feature5 . . . 4 7 .
feature6 8 7 8 . . 13

labelsDf
item label
1 cell1 a
2 cell2 a
3 cell3 a
4 cell4 b
5 cell5 b
6 cell6 b

But when running the function I get the error that I said in the first message

from too-many-cells.

How did you install TooManyCells? Docker or from source?

from too-many-cells.

I installed it as any other R package using:

install.packages("devtools")
library(devtools)
install_github("GregorySchwartz/tooManyCellsR")

I also installed the other packages that tooManyCells uses:
cowplot
ggplot2
edgeR
jsonlite

from too-many-cells.

Did you install the TooManyCells program (https://gregoryschwartz.github.io/too-many-cells/)?

from too-many-cells.

Did installing the command line program work?

from too-many-cells.