Comments (3)
smarhon
commented on May 29, 2024
I am trying to run the pipeline on the cluster, but the pipeline crashes with this error message. too-many-cells: /scratch/3950086: openTempFile: does not exist (No such file or directory). Does it mean the pipeline could not create temporary folder/file?
from too-many-cells.
GregorySchwartz
commented on May 29, 2024
It is likely that you do not have permission for the current $TMPDIR, try changing that variable in your shell or script to some other directory to store temporary files. Either permanently in your ~/.bashrc or temporarily: export TMPDIR=/path/to/a/directory/you/own.
from too-many-cells.
smarhon
commented on May 29, 2024
Thanks! yes, that solved the problem. It was permission issue.
from too-many-cells.
Related Issues (20)
- kent-394 not supported HOT 9
- Running a million cells failed in the docker HOT 2
- Purity section in too-many-cells HOT 4
- error, called at src/Data/Sparse/SpMatrix.hs:793:22 in sparse-linear-algebra-0.3.2-LJ5QWDyWqk8g1L9MLmVBX:Data.Sparse.SpMatrix HOT 5
- comparative analysis of clustering performance HOT 2
- comparative analysis of clustering performance #37 HOT 3
- can't install the included projects HOT 13
- Error when installing with nix on CentOS 7 HOT 4
- Strange warnings occurred during the procedure HOT 3
- A problem for batch effect removed data HOT 11
- fail when downloading ucsc browser HOT 2
- Index out of bounds for TooManyPeaks HOT 7
- Prune parameters setting question HOT 1
- Question: Does well separated color in the dendrogram mean that the items are distinct? HOT 1
- Seurat SCtransform HOT 1
- Installation fails with nix-env ('__noChroot' set, but that's not allowed when 'sandbox' is 'true') HOT 7
- How to modify the colors of the PieChart HOT 1
- Expected runtime HOT 1
- Is matrixValidity printing row and column wrong? HOT 17
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from too-many-cells.