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aa-mapper

Return the amino acid maps from the germline to the mutants within each clone in a CLIP fasta file.

autorotate

Autorotate the screen

autorotate-majority

Autorotation of Tablet PCs based on majority rule

awesome-single-cell

List of software packages for single-cell data analysis, including RNA-seq, ATAC-seq, etc.

bedtools2

A powerful toolset for genome arithmetic.

biobasenewick

birch-beer

Generate a tree for displaying a hierarchy of groups with colors, scaling, and more.

blosum

BLOSUM matrix generator with the addition of any generic characters for special amino acids

citeproc-endnote

Pandoc filter which converts LaTeX to Docx with EndNote traveling library.

clone-size-filter

Filter for clones of a certain size in a fasta file

clumpiness

Library for measuring clumpiness of a hierarchical container such as a tree or dendrogram

collapse-duplication

Process the output of heatitup in order to collapse sequences into clones by similar ITD mutations.

computationaljournalclub

convert-annotation

Convert the annotation of a gene to another in a delimited file using a variety of different databases.

count-mutations

Return the mutation counts with certain biases from the germline to the mutants within clones in CLIP fasta files.

csv-to-fasta

Takes in a csv file and returns a fasta or CLIP fasta file with germlines and / or clones.

diagrams-builder

Utilities for creating diagram-building tools

diagrams-graphviz

Graph layout and drawing with GraphViz and diagrams

differential

Finds out whether an entity comes from different distributions (statuses).

dissertationdocs

LaTeX dissertation template and examples for a Ph.D. in Physics at Drexel

diversity

Calculates the diversity of each position in a fasta file.

dotfiles

eigen

Haskell bindings to the Eigen C++ library

elbow

Use rotations to identify the elbow point of a two-dimensional long-tailed distribution.

fasta

The Fasta type as used by my programs.

find-clumpiness

Find the clumpiness of labels in a Haskell or JSON formatted tree.

foreststructures

Tree and forest structures in Haskell

github-orgmode-tests

This is a test project where you can explore how github interprets Org-mode files

gitrev

Compile git revision info into Haskell projects

google-music-dupe-killer

Removes any duplicate songs from Google Music that have the same title and album.