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GDFError: GDF_UNSUPPORTED_DTYPE with std() function
When running notebooks/mapd_to_pygdf_to_h2oaiglm.ipynb, an error occurs during step 23...
for k in (num_cols - response_set):
df[k] = df[k].fillna(df[k].mean())
assert df[k].null_count == 0
std = df[k].std()
# drop near constant columns
if not np.isfinite(std) or std < 1e-4:
del df[k]
print('drop near constant', k)
else:
df[k] = df[k].scale()
Error output:
---------------------------------------------------------------------------
GDFError Traceback (most recent call last)
<ipython-input-26-43006e4ffe8b> in <module>()
2 df[k] = df[k].fillna(df[k].mean())
3 assert df[k].null_count == 0
----> 4 std = df[k].std()
5 # drop near constant columns
6 if not np.isfinite(std) or std < 1e-4:
/home/appuser/pygdf/pygdf/dataframe.py in std(self)
1074 """Compute the standard deviation of the series
1075 """
-> 1076 return np.sqrt(self.var())
1077
1078 def var(self):
/home/appuser/pygdf/pygdf/dataframe.py in var(self)
1079 """Compute the variance of the series
1080 """
-> 1081 mu, var = self.mean_var()
1082 return var
1083
/home/appuser/pygdf/pygdf/dataframe.py in mean_var(self)
1085 """Compute mean and variance at the same time.
1086 """
-> 1087 mu, var = self._impl.stats(self).mean_var()
1088 return mu, var
1089
/home/appuser/pygdf/pygdf/numerical.py in mean_var(self)
130 mu = self.mean()
131 n = len(self._series)
--> 132 asum = _gdf.apply_reduce(libgdf.gdf_sum_squared_generic, self._series)
133 var = asum / n - mu ** 2
134 return mu, var
/home/appuser/pygdf/pygdf/_gdf.py in apply_reduce(fn, inp)
82 out = cuda.device_array(outsz, dtype=inp.dtype)
83 # call reduction
---> 84 fn(inp._cffi_view, unwrap_devary(out), outsz)
85 # return 1st element
86 return out[0]
/home/appuser/Miniconda3/envs/pycudf_notebook_py35/lib/python3.5/site-packages/libgdf_cffi/wrapper.py in wrap(*args)
26 raw = self._api.gdf_error_get_name(errcode)
27 errname = self._ffi.string(raw).decode('ascii')
---> 28 raise GDFError(errcode, errname)
29
30 wrap.__name__ = fn.__name__
GDFError: GDF_UNSUPPORTED_DTYPE
df is a pygdf.dataframe.DataFrame
df[k] is a pygdf.dataframe.Series
df[k][0] is a numpy.int32
h2o4gpu
Where can I find this python package?
ENV H2O4GPU_WHL="h2o4gpu-0.0.3-py2.py3-none-any.whl"
Build fails
s@m:/repos/demo-docker$` cd notebook-demo-docker/
s@m:/repos/demo-docker/notebook-demo-docker$ sudo docker build -t goai/base:latest ./base
Sending build context to Docker daemon 2.56kB
Step 1/15 : FROM nvidia/cuda:8.0-devel-ubuntu16.04
8.0-devel-ubuntu16.04: Pulling from nvidia/cuda
18d680d61657: Pull complete
0addb6fece63: Pull complete
78e58219b215: Pull complete
eb6959a66df2: Pull complete
d1bcc6a334d5: Pull complete
5bc1463ac5cb: Pull complete
8c6b676884f3: Pull complete
080505c2ee9a: Pull complete
Digest: sha256:163ebaedd4f8f70f7d670a5c36f8cb4174a6d93b904f8b7887eda1ccfdd9631e
Status: Downloaded newer image for nvidia/cuda:8.0-devel-ubuntu16.04
---> 944fa607b10a
Step 2/15 : SHELL ["/bin/bash", "-c"]
---> Running in dfe0e8ec93d0
Removing intermediate container dfe0e8ec93d0
---> d806b84e8012
Step 3/15 : RUN apt-get update
---> Running in 6ae1ba170360
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Ign:3 https://developer.download.nvidia.com/compute/cuda/repos/ubuntu1604/x86_64 InRelease
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Reading package lists...
Removing intermediate container 6ae1ba170360
---> 67373a1fbd35
Step 4/15 : RUN apt-get install -y wget git vim
---> Running in eacdad8e2db1
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
file git-man less libbsd0 libedit2 liberror-perl libexpat1 libgpm2 libmagic1
libmpdec2 libpopt0 libpython3.5 libpython3.5-minimal libpython3.5-stdlib
libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6 libxmuu1
mime-support openssh-client rsync vim-common vim-runtime xauth
Suggested packages:
gettext-base git-daemon-run | git-daemon-sysvinit git-doc git-el git-email
git-gui gitk gitweb git-arch git-cvs git-mediawiki git-svn gpm ssh-askpass
libpam-ssh keychain monkeysphere openssh-server ctags vim-doc vim-scripts
vim-gnome-py2 | vim-gtk-py2 | vim-gtk3-py2 | vim-athena-py2 | vim-nox-py2
The following NEW packages will be installed:
file git git-man less libbsd0 libedit2 liberror-perl libexpat1 libgpm2
libmagic1 libmpdec2 libpopt0 libpython3.5 libpython3.5-minimal
libpython3.5-stdlib libx11-6 libx11-data libxau6 libxcb1 libxdmcp6 libxext6
libxmuu1 mime-support openssh-client rsync vim vim-common vim-runtime wget
xauth
0 upgraded, 30 newly installed, 0 to remove and 10 not upgraded.
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update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/vim (vim) in auto mode
update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/vimdiff (vimdiff) in auto mode
update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/rvim (rvim) in auto mode
update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/rview (rview) in auto mode
update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/vi (vi) in auto mode
update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/view (view) in auto mode
update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/ex (ex) in auto mode
update-alternatives: using /usr/bin/vim.basic to provide /usr/bin/editor (editor) in auto mode
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Removing intermediate container eacdad8e2db1
---> a91ebafeb8f4
Step 5/15 : RUN useradd -ms /bin/bash appuser
---> Running in 80f73aa295a6
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---> e44fbedebc6f
Step 6/15 : USER appuser
---> Running in a5edd036fcbd
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Step 7/15 : WORKDIR /home/appuser
---> Running in 305ba55b1627
Removing intermediate container 305ba55b1627
---> d506278b9dbb
Step 8/15 : RUN wget https://repo.continuum.io/miniconda/Miniconda3-4.3.11-Linux-x86_64.sh
---> Running in e83ecf7926cf
--2018-10-30 06:50:42-- https://repo.continuum.io/miniconda/Miniconda3-4.3.11-Linux-x86_64.sh
Resolving repo.continuum.io (repo.continuum.io)... 104.16.18.10, 104.16.19.10, 2400:cb00:2048:1::6810:120a, ...
Connecting to repo.continuum.io (repo.continuum.io)|104.16.18.10|:443... connected.
HTTP request sent, awaiting response... 200 OK
Length: 34663461 (33M) [application/x-sh]
Saving to: 'Miniconda3-4.3.11-Linux-x86_64.sh'
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2018-10-30 06:50:51 (3.85 MB/s) - 'Miniconda3-4.3.11-Linux-x86_64.sh' saved [34663461/34663461]
Removing intermediate container e83ecf7926cf
---> 7553e04b9f59
Step 9/15 : RUN bash Miniconda3-4.3.11-Linux-x86_64.sh -b -p /home/appuser/Miniconda3
---> Running in 8cab83210281
PREFIX=/home/appuser/Miniconda3
installing: python-3.6.0-0 ...
installing: cffi-1.9.1-py36_0 ...
installing: conda-env-2.6.0-0 ...
installing: cryptography-1.7.1-py36_0 ...
installing: idna-2.2-py36_0 ...
installing: libffi-3.2.1-1 ...
installing: openssl-1.0.2k-0 ...
installing: pyasn1-0.1.9-py36_0 ...
installing: pycosat-0.6.1-py36_1 ...
installing: pycparser-2.17-py36_0 ...
installing: pyopenssl-16.2.0-py36_0 ...
installing: readline-6.2-2 ...
installing: requests-2.12.4-py36_0 ...
installing: ruamel_yaml-0.11.14-py36_1 ...
installing: setuptools-27.2.0-py36_0 ...
installing: six-1.10.0-py36_0 ...
installing: sqlite-3.13.0-0 ...
installing: tk-8.5.18-0 ...
installing: xz-5.2.2-1 ...
installing: yaml-0.1.6-0 ...
installing: zlib-1.2.8-3 ...
installing: conda-4.3.11-py36_0 ...
installing: pip-9.0.1-py36_1 ...
installing: wheel-0.29.0-py36_0 ...
Python 3.6.0 :: Continuum Analytics, Inc.
creating default environment...
installation finished.
Removing intermediate container 8cab83210281
---> 3a5396a89cd8
Step 10/15 : ENV PATH=$PATH:/home/appuser/Miniconda3/bin
---> Running in 472aaa716614
Removing intermediate container 472aaa716614
---> a521c0016e4f
Step 11/15 : USER root
---> Running in ad9cfed2fdb9
Removing intermediate container ad9cfed2fdb9
---> 386e78328582
Step 12/15 : RUN apt-get update --fix-missing
---> Running in e62e3677625e
Hit:1 http://security.ubuntu.com/ubuntu xenial-security InRelease
Hit:2 http://archive.ubuntu.com/ubuntu xenial InRelease
Hit:3 http://archive.ubuntu.com/ubuntu xenial-updates InRelease
Ign:4 https://developer.download.nvidia.com/compute/cuda/repos/ubuntu1604/x86_64 InRelease
Hit:5 https://developer.download.nvidia.com/compute/cuda/repos/ubuntu1604/x86_64 Release
Hit:6 http://archive.ubuntu.com/ubuntu xenial-backports InRelease
Reading package lists...
Removing intermediate container e62e3677625e
---> 284d4fe2ed74
Step 13/15 : RUN apt-get install -y default-jre-headless
---> Running in fa0e5cec22d4
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
ca-certificates-java dbus fontconfig-config fonts-dejavu-core java-common
libavahi-client3 libavahi-common-data libavahi-common3 libcap-ng0 libcups2
libdbus-1-3 libfontconfig1 libfreetype6 libjpeg-turbo8 libjpeg8 liblcms2-2
libnspr4 libnss3 libnss3-nssdb libpcsclite1 libpng12-0 libxi6 libxrender1
libxtst6 openjdk-8-jre-headless ucf x11-common
Suggested packages:
dbus-user-session | dbus-x11 default-jre cups-common liblcms2-utils pcscd
libnss-mdns fonts-dejavu-extra fonts-ipafont-gothic fonts-ipafont-mincho
fonts-wqy-microhei fonts-wqy-zenhei fonts-indic
The following NEW packages will be installed:
ca-certificates-java dbus default-jre-headless fontconfig-config
fonts-dejavu-core java-common libavahi-client3 libavahi-common-data
libavahi-common3 libcap-ng0 libcups2 libdbus-1-3 libfontconfig1 libfreetype6
libjpeg-turbo8 libjpeg8 liblcms2-2 libnspr4 libnss3 libnss3-nssdb
libpcsclite1 libpng12-0 libxi6 libxrender1 libxtst6 openjdk-8-jre-headless
ucf x11-common
0 upgraded, 28 newly installed, 0 to remove and 10 not upgraded.
Need to get 30.9 MB of archives.
After this operation, 113 MB of additional disk space will be used.
Get:1 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libjpeg-turbo8 amd64 1.4.2-0ubuntu3.1 [111 kB]
Get:2 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 x11-common all 1:7.7+13ubuntu3.1 [22.9 kB]
Get:3 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxtst6 amd64 2:1.2.2-1 [14.1 kB]
Get:4 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpng12-0 amd64 1.2.54-1ubuntu1.1 [116 kB]
Get:5 http://archive.ubuntu.com/ubuntu xenial/main amd64 ucf all 3.0036 [52.9 kB]
Get:6 http://archive.ubuntu.com/ubuntu xenial/main amd64 libcap-ng0 amd64 0.7.7-1 [10.9 kB]
Get:7 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libdbus-1-3 amd64 1.10.6-1ubuntu3.3 [161 kB]
Get:8 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 dbus amd64 1.10.6-1ubuntu3.3 [142 kB]
Get:9 http://archive.ubuntu.com/ubuntu xenial/main amd64 java-common all 0.56ubuntu2 [7742 B]
Get:10 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libavahi-common-data amd64 0.6.32~rc+dfsg-1ubuntu2.2 [21.5 kB]
Get:11 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libavahi-common3 amd64 0.6.32~rc+dfsg-1ubuntu2.2 [21.6 kB]
Get:12 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libavahi-client3 amd64 0.6.32~rc+dfsg-1ubuntu2.2 [25.2 kB]
Get:13 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libcups2 amd64 2.1.3-4ubuntu0.5 [197 kB]
Get:14 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 liblcms2-2 amd64 2.6-3ubuntu2.1 [136 kB]
Get:15 http://archive.ubuntu.com/ubuntu xenial/main amd64 libjpeg8 amd64 8c-2ubuntu8 [2194 B]
Get:16 http://archive.ubuntu.com/ubuntu xenial/main amd64 fonts-dejavu-core all 2.35-1 [1039 kB]
Get:17 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 fontconfig-config all 2.11.94-0ubuntu1.1 [49.9 kB]
Get:18 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libfreetype6 amd64 2.6.1-0.1ubuntu2.3 [316 kB]
Get:19 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libfontconfig1 amd64 2.11.94-0ubuntu1.1 [131 kB]
Get:20 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libnspr4 amd64 2:4.13.1-0ubuntu0.16.04.1 [112 kB]
Get:21 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libnss3-nssdb all 2:3.28.4-0ubuntu0.16.04.3 [10.6 kB]
Get:22 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libnss3 amd64 2:3.28.4-0ubuntu0.16.04.3 [1148 kB]
Get:23 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libpcsclite1 amd64 1.8.14-1ubuntu1.16.04.1 [21.4 kB]
Get:24 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxi6 amd64 2:1.7.6-1 [28.6 kB]
Get:25 http://archive.ubuntu.com/ubuntu xenial/main amd64 libxrender1 amd64 1:0.9.9-0ubuntu1 [18.5 kB]
Get:26 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 openjdk-8-jre-headless amd64 8u181-b13-0ubuntu0.16.04.1 [27.0 MB]
Get:27 http://archive.ubuntu.com/ubuntu xenial/main amd64 default-jre-headless amd64 2:1.8-56ubuntu2 [4380 B]
Get:28 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 ca-certificates-java all 20160321ubuntu1 [12.5 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 30.9 MB in 1min 17s (396 kB/s)
Selecting previously unselected package libjpeg-turbo8:amd64.
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dpkg-query: no packages found matching nux-tools
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Unpacking libpng12-0:amd64 (1.2.54-1ubuntu1.1) ...
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Moving old data out of the way
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Unpacking ca-certificates-java (20160321ubuntu1) ...
Processing triggers for libc-bin (2.23-0ubuntu10) ...
Processing triggers for systemd (229-4ubuntu21.4) ...
Processing triggers for ca-certificates (20170717~16.04.1) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Setting up libjpeg-turbo8:amd64 (1.4.2-0ubuntu3.1) ...
Setting up x11-common (1:7.7+13ubuntu3.1) ...
debconf: unable to initialize frontend: Dialog
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debconf: falling back to frontend: Readline
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
invoke-rc.d: could not determine current runlevel
invoke-rc.d: policy-rc.d denied execution of start.
Setting up libxtst6:amd64 (2:1.2.2-1) ...
Setting up libpng12-0:amd64 (1.2.54-1ubuntu1.1) ...
Setting up ucf (3.0036) ...
debconf: unable to initialize frontend: Dialog
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debconf: falling back to frontend: Readline
Setting up libcap-ng0:amd64 (0.7.7-1) ...
Setting up libdbus-1-3:amd64 (1.10.6-1ubuntu3.3) ...
Setting up dbus (1.10.6-1ubuntu3.3) ...
Setting up java-common (0.56ubuntu2) ...
Setting up libavahi-common-data:amd64 (0.6.32~rc+dfsg-1ubuntu2.2) ...
Setting up libavahi-common3:amd64 (0.6.32~rc+dfsg-1ubuntu2.2) ...
Setting up libavahi-client3:amd64 (0.6.32~rc+dfsg-1ubuntu2.2) ...
Setting up libcups2:amd64 (2.1.3-4ubuntu0.5) ...
Setting up liblcms2-2:amd64 (2.6-3ubuntu2.1) ...
Setting up libjpeg8:amd64 (8c-2ubuntu8) ...
Setting up fonts-dejavu-core (2.35-1) ...
Setting up fontconfig-config (2.11.94-0ubuntu1.1) ...
Setting up libfreetype6:amd64 (2.6.1-0.1ubuntu2.3) ...
Setting up libfontconfig1:amd64 (2.11.94-0ubuntu1.1) ...
Setting up libnspr4:amd64 (2:4.13.1-0ubuntu0.16.04.1) ...
Setting up libpcsclite1:amd64 (1.8.14-1ubuntu1.16.04.1) ...
Setting up libxi6:amd64 (2:1.7.6-1) ...
Setting up libxrender1:amd64 (1:0.9.9-0ubuntu1) ...
Setting up libnss3-nssdb (2:3.28.4-0ubuntu0.16.04.3) ...
Setting up libnss3:amd64 (2:3.28.4-0ubuntu0.16.04.3) ...
Setting up openjdk-8-jre-headless:amd64 (8u181-b13-0ubuntu0.16.04.1) ...
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/rmid to provide /usr/bin/rmid (rmid) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/java to provide /usr/bin/java (java) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/keytool to provide /usr/bin/keytool (keytool) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/jjs to provide /usr/bin/jjs (jjs) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/pack200 to provide /usr/bin/pack200 (pack200) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/rmiregistry to provide /usr/bin/rmiregistry (rmiregistry) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/unpack200 to provide /usr/bin/unpack200 (unpack200) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/orbd to provide /usr/bin/orbd (orbd) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/servertool to provide /usr/bin/servertool (servertool) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/bin/tnameserv to provide /usr/bin/tnameserv (tnameserv) in auto mode
update-alternatives: using /usr/lib/jvm/java-8-openjdk-amd64/jre/lib/jexec to provide /usr/bin/jexec (jexec) in auto mode
Setting up default-jre-headless (2:1.8-56ubuntu2) ...
Setting up ca-certificates-java (20160321ubuntu1) ...
Adding debian:SwissSign_Gold_CA_-_G2.pem
Adding debian:thawte_Primary_Root_CA_-_G3.pem
Adding debian:USERTrust_RSA_Certification_Authority.pem
Adding debian:Swisscom_Root_CA_2.pem
Adding debian:IdenTrust_Public_Sector_Root_CA_1.pem
Adding debian:QuoVadis_Root_CA_2_G3.pem
Adding debian:AffirmTrust_Networking.pem
Adding debian:CFCA_EV_ROOT.pem
Adding debian:Buypass_Class_2_Root_CA.pem
Adding debian:QuoVadis_Root_CA.pem
Adding debian:DST_Root_CA_X3.pem
Adding debian:Taiwan_GRCA.pem
Adding debian:ePKI_Root_Certification_Authority.pem
Adding debian:Certinomis_-_Root_CA.pem
Adding debian:Amazon_Root_CA_3.pem
Adding debian:Amazon_Root_CA_4.pem
Adding debian:thawte_Primary_Root_CA.pem
Adding debian:GeoTrust_Primary_Certification_Authority_-_G3.pem
Adding debian:SecureSign_RootCA11.pem
Adding debian:Entrust_Root_Certification_Authority_-_EC1.pem
Adding debian:Certplus_Class_2_Primary_CA.pem
Adding debian:Certigna.pem
Adding debian:EC-ACC.pem
Adding debian:certSIGN_ROOT_CA.pem
Adding debian:TURKTRUST_Certificate_Services_Provider_Root_2007.pem
Adding debian:Certinomis_-_Autoritรฉ_Racine.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_ECC_RootCA_2015.pem
Adding debian:Comodo_Trusted_Services_root.pem
Adding debian:Global_Chambersign_Root_-_2008.pem
Adding debian:UTN_USERFirst_Hardware_Root_CA.pem
Adding debian:NetLock_Arany_=Class_Gold=_Fลtanรบsรญtvรกny.pem
Adding debian:AffirmTrust_Premium_ECC.pem
Adding debian:Staat_der_Nederlanden_Root_CA_-_G3.pem
Adding debian:Certplus_Root_CA_G2.pem
Adding debian:SecureTrust_CA.pem
Adding debian:Staat_der_Nederlanden_Root_CA_-_G2.pem
Adding debian:QuoVadis_Root_CA_3.pem
Adding debian:Comodo_Secure_Services_root.pem
Adding debian:DigiCert_Assured_ID_Root_G3.pem
Adding debian:AffirmTrust_Premium.pem
Adding debian:T-TeleSec_GlobalRoot_Class_3.pem
Adding debian:GlobalSign_Root_CA_-_R2.pem
Adding debian:OpenTrust_Root_CA_G2.pem
Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G4.pem
Adding debian:Security_Communication_RootCA2.pem
Adding debian:TeliaSonera_Root_CA_v1.pem
Adding debian:Entrust_Root_Certification_Authority.pem
Adding debian:GlobalSign_Root_CA_-_R3.pem
Adding debian:Starfield_Class_2_CA.pem
Adding debian:OISTE_WISeKey_Global_Root_GA_CA.pem
Adding debian:XRamp_Global_CA_Root.pem
Adding debian:Network_Solutions_Certificate_Authority.pem
Adding debian:Staat_der_Nederlanden_EV_Root_CA.pem
Adding debian:OpenTrust_Root_CA_G3.pem
Adding debian:Sonera_Class_2_Root_CA.pem
Adding debian:AddTrust_Public_Services_Root.pem
Adding debian:DigiCert_Global_Root_CA.pem
Adding debian:DigiCert_Assured_ID_Root_CA.pem
Adding debian:Deutsche_Telekom_Root_CA_2.pem
Adding debian:DST_ACES_CA_X6.pem
Adding debian:GlobalSign_Root_CA.pem
Adding debian:CA_Disig_Root_R2.pem
Adding debian:Actalis_Authentication_Root_CA.pem
Adding debian:Entrust_Root_Certification_Authority_-_G2.pem
Adding debian:LuxTrust_Global_Root_2.pem
Adding debian:Verisign_Class_3_Public_Primary_Certification_Authority_-_G3.pem
Adding debian:E-Tugra_Certification_Authority.pem
Adding debian:TWCA_Global_Root_CA.pem
Adding debian:Izenpe.com.pem
Adding debian:China_Internet_Network_Information_Center_EV_Certificates_Root.pem
Adding debian:CA_Disig_Root_R1.pem
Adding debian:CNNIC_ROOT.pem
Adding debian:Security_Communication_EV_RootCA1.pem
Adding debian:USERTrust_ECC_Certification_Authority.pem
Adding debian:DigiCert_Trusted_Root_G4.pem
Adding debian:Atos_TrustedRoot_2011.pem
Adding debian:DigiCert_Global_Root_G3.pem
Adding debian:AffirmTrust_Commercial.pem
Adding debian:AddTrust_Low-Value_Services_Root.pem
Adding debian:GeoTrust_Global_CA_2.pem
Adding debian:Starfield_Services_Root_Certificate_Authority_-_G2.pem
Adding debian:Certum_Trusted_Network_CA.pem
Adding debian:Hongkong_Post_Root_CA_1.pem
Adding debian:Certplus_Root_CA_G1.pem
Adding debian:TรBฤฐTAK_UEKAE_Kรถk_Sertifika_Hizmet_Saฤlayฤฑcฤฑsฤฑ_-_Sรผrรผm_3.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_EV_2009.pem
Adding debian:SwissSign_Silver_CA_-_G2.pem
Adding debian:DigiCert_Global_Root_G2.pem
Adding debian:QuoVadis_Root_CA_3_G3.pem
Adding debian:GeoTrust_Universal_CA.pem
Adding debian:AddTrust_Qualified_Certificates_Root.pem
Adding debian:EE_Certification_Centre_Root_CA.pem
Adding debian:VeriSign_Class_3_Public_Primary_Certification_Authority_-_G5.pem
Adding debian:Amazon_Root_CA_1.pem
Adding debian:Autoridad_de_Certificacion_Firmaprofesional_CIF_A62634068.pem
Adding debian:Secure_Global_CA.pem
Adding debian:Chambers_of_Commerce_Root_-_2008.pem
Adding debian:COMODO_Certification_Authority.pem
Adding debian:Go_Daddy_Root_Certificate_Authority_-_G2.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2015.pem
Adding debian:TรRKTRUST_Elektronik_Sertifika_Hizmet_Saฤlayฤฑcฤฑsฤฑ_H5.pem
Adding debian:Entrust.net_Premium_2048_Secure_Server_CA.pem
Adding debian:Hellenic_Academic_and_Research_Institutions_RootCA_2011.pem
Adding debian:GeoTrust_Primary_Certification_Authority_-_G2.pem
Adding debian:Camerfirma_Chambers_of_Commerce_Root.pem
Adding debian:Certum_Root_CA.pem
Adding debian:thawte_Primary_Root_CA_-_G2.pem
Adding debian:GeoTrust_Universal_CA_2.pem
Adding debian:Trustis_FPS_Root_CA.pem
Adding debian:AddTrust_External_Root.pem
Adding debian:Microsec_e-Szigno_Root_CA_2009.pem
Adding debian:OpenTrust_Root_CA_G1.pem
Adding debian:Buypass_Class_3_Root_CA.pem
Adding debian:Swisscom_Root_CA_1.pem
Adding debian:Comodo_AAA_Services_root.pem
Adding debian:Cybertrust_Global_Root.pem
Adding debian:GeoTrust_Primary_Certification_Authority.pem
Adding debian:PSCProcert.pem
Adding debian:DigiCert_Assured_ID_Root_G2.pem
Adding debian:IdenTrust_Commercial_Root_CA_1.pem
Adding debian:DigiCert_High_Assurance_EV_Root_CA.pem
Adding debian:QuoVadis_Root_CA_1_G3.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R4.pem
Adding debian:Security_Communication_Root_CA.pem
Adding debian:SZAFIR_ROOT_CA2.pem
Adding debian:VeriSign_Universal_Root_Certification_Authority.pem
Adding debian:ACCVRAIZ1.pem
Adding debian:AC_RAIZ_FNMT-RCM.pem
Adding debian:Certum_Trusted_Network_CA_2.pem
Adding debian:T-TeleSec_GlobalRoot_Class_2.pem
Adding debian:ISRG_Root_X1.pem
Adding debian:D-TRUST_Root_Class_3_CA_2_2009.pem
Adding debian:Starfield_Root_Certificate_Authority_-_G2.pem
Adding debian:GeoTrust_Global_CA.pem
Adding debian:Visa_eCommerce_Root.pem
Adding debian:Baltimore_CyberTrust_Root.pem
Adding debian:TUBITAK_Kamu_SM_SSL_Kok_Sertifikasi_-_Surum_1.pem
Adding debian:TWCA_Root_Certification_Authority.pem
Adding debian:ACEDICOM_Root.pem
Adding debian:Go_Daddy_Class_2_CA.pem
Adding debian:Swisscom_Root_EV_CA_2.pem
Adding debian:OISTE_WISeKey_Global_Root_GB_CA.pem
Adding debian:Amazon_Root_CA_2.pem
Adding debian:COMODO_ECC_Certification_Authority.pem
Adding debian:QuoVadis_Root_CA_2.pem
Adding debian:GlobalSign_ECC_Root_CA_-_R5.pem
Adding debian:COMODO_RSA_Certification_Authority.pem
Adding debian:Camerfirma_Global_Chambersign_Root.pem
done.
Processing triggers for libc-bin (2.23-0ubuntu10) ...
Processing triggers for systemd (229-4ubuntu21.4) ...
Processing triggers for ca-certificates (20170717~16.04.1) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
done.
Removing intermediate container fa0e5cec22d4
---> c73278772fb6
Step 14/15 : RUN apt-get install -y libopenblas-dev
---> Running in 669b4fbcf221
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
gfortran gfortran-5 libblas-common libblas-dev libblas3 libgfortran-5-dev
libgfortran3 libopenblas-base
Suggested packages:
gfortran-multilib gfortran-doc gfortran-5-multilib gfortran-5-doc
libgfortran3-dbg liblapack-doc-man liblapack-doc
The following NEW packages will be installed:
gfortran gfortran-5 libblas-common libblas-dev libblas3 libgfortran-5-dev
libgfortran3 libopenblas-base libopenblas-dev
0 upgraded, 9 newly installed, 0 to remove and 10 not upgraded.
Need to get 17.3 MB of archives.
After this operation, 118 MB of additional disk space will be used.
Get:1 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgfortran3 amd64 5.4.0-6ubuntu1~16.04.10 [260 kB]
Get:2 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 libgfortran-5-dev amd64 5.4.0-6ubuntu1~16.04.10 [291 kB]
Get:3 http://archive.ubuntu.com/ubuntu xenial-updates/main amd64 gfortran-5 amd64 5.4.0-6ubuntu1~16.04.10 [8043 kB]
Get:4 http://archive.ubuntu.com/ubuntu xenial/main amd64 gfortran amd64 4:5.3.1-1ubuntu1 [1288 B]
Get:5 http://archive.ubuntu.com/ubuntu xenial/main amd64 libblas-common amd64 3.6.0-2ubuntu2 [5342 B]
Get:6 http://archive.ubuntu.com/ubuntu xenial/main amd64 libblas3 amd64 3.6.0-2ubuntu2 [147 kB]
Get:7 http://archive.ubuntu.com/ubuntu xenial/main amd64 libblas-dev amd64 3.6.0-2ubuntu2 [153 kB]
Get:8 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libopenblas-base amd64 0.2.18-1ubuntu1 [5097 kB]
Get:9 http://archive.ubuntu.com/ubuntu xenial/universe amd64 libopenblas-dev amd64 0.2.18-1ubuntu1 [3300 kB]
debconf: delaying package configuration, since apt-utils is not installed
Fetched 17.3 MB in 44s (386 kB/s)
Selecting previously unselected package libgfortran3:amd64.
(Reading database ... 16116 files and directories currently installed.)
Preparing to unpack .../libgfortran3_5.4.0-6ubuntu1~16.04.10_amd64.deb ...
Unpacking libgfortran3:amd64 (5.4.0-6ubuntu1~16.04.10) ...
Selecting previously unselected package libgfortran-5-dev:amd64.
Preparing to unpack .../libgfortran-5-dev_5.4.0-6ubuntu1~16.04.10_amd64.deb ...
Unpacking libgfortran-5-dev:amd64 (5.4.0-6ubuntu1~16.04.10) ...
Selecting previously unselected package gfortran-5.
Preparing to unpack .../gfortran-5_5.4.0-6ubuntu1~16.04.10_amd64.deb ...
Unpacking gfortran-5 (5.4.0-6ubuntu1~16.04.10) ...
Selecting previously unselected package gfortran.
Preparing to unpack .../gfortran_4%3a5.3.1-1ubuntu1_amd64.deb ...
Unpacking gfortran (4:5.3.1-1ubuntu1) ...
Selecting previously unselected package libblas-common.
Preparing to unpack .../libblas-common_3.6.0-2ubuntu2_amd64.deb ...
Unpacking libblas-common (3.6.0-2ubuntu2) ...
Selecting previously unselected package libblas3.
Preparing to unpack .../libblas3_3.6.0-2ubuntu2_amd64.deb ...
Unpacking libblas3 (3.6.0-2ubuntu2) ...
Selecting previously unselected package libblas-dev.
Preparing to unpack .../libblas-dev_3.6.0-2ubuntu2_amd64.deb ...
Unpacking libblas-dev (3.6.0-2ubuntu2) ...
Selecting previously unselected package libopenblas-base.
Preparing to unpack .../libopenblas-base_0.2.18-1ubuntu1_amd64.deb ...
Unpacking libopenblas-base (0.2.18-1ubuntu1) ...
Selecting previously unselected package libopenblas-dev.
Preparing to unpack .../libopenblas-dev_0.2.18-1ubuntu1_amd64.deb ...
Unpacking libopenblas-dev (0.2.18-1ubuntu1) ...
Processing triggers for libc-bin (2.23-0ubuntu10) ...
Setting up libgfortran3:amd64 (5.4.0-6ubuntu1~16.04.10) ...
Setting up libgfortran-5-dev:amd64 (5.4.0-6ubuntu1~16.04.10) ...
Setting up gfortran-5 (5.4.0-6ubuntu1~16.04.10) ...
Setting up gfortran (4:5.3.1-1ubuntu1) ...
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f95 (f95) in auto mode
update-alternatives: using /usr/bin/gfortran to provide /usr/bin/f77 (f77) in auto mode
Setting up libblas-common (3.6.0-2ubuntu2) ...
Setting up libblas3 (3.6.0-2ubuntu2) ...
update-alternatives: using /usr/lib/libblas/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
Setting up libblas-dev (3.6.0-2ubuntu2) ...
update-alternatives: using /usr/lib/libblas/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
Setting up libopenblas-base (0.2.18-1ubuntu1) ...
update-alternatives: using /usr/lib/openblas-base/libblas.so.3 to provide /usr/lib/libblas.so.3 (libblas.so.3) in auto mode
update-alternatives: using /usr/lib/openblas-base/liblapack.so.3 to provide /usr/lib/liblapack.so.3 (liblapack.so.3) in auto mode
Setting up libopenblas-dev (0.2.18-1ubuntu1) ...
update-alternatives: using /usr/lib/openblas-base/libblas.so to provide /usr/lib/libblas.so (libblas.so) in auto mode
update-alternatives: using /usr/lib/openblas-base/liblapack.so to provide /usr/lib/liblapack.so (liblapack.so) in auto mode
Processing triggers for libc-bin (2.23-0ubuntu10) ...
Removing intermediate container 669b4fbcf221
---> 5d0483c0f833
Step 15/15 : USER appuser
---> Running in 570e8ecb4a5f
Removing intermediate container 570e8ecb4a5f
---> 69cc3fb34ccc
Successfully built 69cc3fb34ccc
Successfully tagged goai/base:latest
s@m:/mnt/md0/shaun/repos/demo-docker/notebook-demo-docker$ sudo docker build -t goai/demo:latest ./demo
Sending build context to Docker daemon 11.85MB
Step 1/38 : FROM goai/base:latest
---> 69cc3fb34ccc
Step 2/38 : ENV PYGDF_CONDA_ENV=pygdf_examples
---> Running in 88624f0defb0
Removing intermediate container 88624f0defb0
---> 38cd1076db61
Step 3/38 : USER appuser
---> Running in c553a8fa399b
Removing intermediate container c553a8fa399b
---> dee6044cfdca
Step 4/38 : RUN mkdir data
---> Running in 79bb9d5fb61e
Removing intermediate container 79bb9d5fb61e
---> ba335a096824
Step 5/38 : RUN wget -nv http://archive.ics.uci.edu/ml/machine-learning-databases/00344/Activity%20recognition%20exp.zip -O "data/Activity recognition exp.zip"
---> Running in 6711442344c2
2018-10-30 06:56:32 URL:http://archive.ics.uci.edu/ml/machine-learning-databases/00344/Activity%20recognition%20exp.zip [777127275/777127275] -> "data/Activity recognition exp.zip" [1]
Removing intermediate container 6711442344c2
---> a4bed4da3a7c
Step 6/38 : ENV MAPD_FILE="mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open"
---> Running in 6ac0f4248bb0
Removing intermediate container 6ac0f4248bb0
---> 39d51110134e
Step 7/38 : ADD https://mapd-core-os-builds.s3.amazonaws.com/${MAPD_FILE}.tar.gz ${MAPD_FILE}.tar.gz
Downloading [==================================================>] 83.12MB/83.12MB
---> 65f1162e7099
Step 8/38 : USER root
---> Running in b3107743a419
Removing intermediate container b3107743a419
---> 0e3c832b1444
Step 9/38 : RUN chown appuser ${MAPD_FILE}.tar.gz
---> Running in 1a9553c2aafd
Removing intermediate container 1a9553c2aafd
---> b1a4676609b3
Step 10/38 : USER appuser
---> Running in 017a1932874c
Removing intermediate container 017a1932874c
---> 986d0957cfd9
Step 11/38 : RUN tar -xvf ${MAPD_FILE}.tar.gz
---> Running in 93fe7700b0d3
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/systemd/
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/systemd/mapd_server.service.in
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/systemd/install_mapd_systemd.sh
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/systemd/mapd_web_server.service.in
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/systemd/[email protected]
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/systemd/mapd-sds.conf.in
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/systemd/[email protected]
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/systemd/mapd.conf.in
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/systemd/[email protected]
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/systemd/mapd_sd_server.service.in
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/SampleCode/
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/SampleCode/DataGen.cpp
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/SampleCode/StreamInsert
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/SampleCode/MapDExample.py
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/SampleCode/mapd_jdbc_example.py
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/SampleCode/fix_recursive_structs.py
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/SampleCode/Batch.java
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/SampleCode/StreamInsertSimple.cpp
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/SampleCode/kafka-clickthrough/
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/SampleCode/kafka-clickthrough/pom.xml
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/SampleCode/kafka-clickthrough/src/
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/SampleCode/kafka-clickthrough/src/flavors/
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/SampleCode/kafka-clickthrough/src/flavors/FlavorPicker.java
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/SampleCode/kafka-clickthrough/src/flavors/FlavorConsumer.java
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/SampleCode/CMakeLists.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/SampleCode/MapDExample.java
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/SampleCode/FindThrift.cmake
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/SampleCode/MapDExample.cs
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/SampleCode/StreamInsert.cpp
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/SampleCode/StreamInsertSimple
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/SampleCode/mapd.thrift
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/SampleCode/mapd_jdbc.py
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/SampleCode/SampleJDBC.java
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/SampleCode/DataGen
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/SampleCode/stream_insert.py
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/SampleCode/README.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/insert_sample_data
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/QueryEngine/
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/QueryEngine/ExtensionFunctions.ast
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/QueryEngine/RuntimeFunctions.bc
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/QueryEngine/cuda_mapd_rt.a
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/docker/
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/docker/Dockerfile
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/docker/README.md
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/LICENSE.md
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/mapd.thrift
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/bin/
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/bin/mapdql
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/bin/calcite-1.0-SNAPSHOT-jar-with-dependencies.jar
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/bin/mapd_server
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/bin/mapdjdbc-1.0-SNAPSHOT-jar-with-dependencies.jar
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/bin/generate_cert
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/bin/initdb
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/bin/mapd_web_server
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/bin/mapd-1.0-SNAPSHOT-jar-with-dependencies.jar
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/MAPD_GIT_HASH.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/EULA-CE.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/logrus.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/libpng.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/go-metrics.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/libexpat.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/xorg.html
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/double-conversion.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/rapidjson.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/index.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/BITSHUFFLE.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/commons-math.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/uriparser.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/commons-cli.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/gorilla.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/gdal.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/google-glog.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/libkml.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/afero.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/FASTLZ.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/cors.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/SNAPPY.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/thrift.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/gflags.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/generate-cert.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/minizip.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/poly2tri.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/cryptopp.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/llvm.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/libcurl.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/calcite.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/LZ4.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/linenoise.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/boost.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/index.md
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/shapelib.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/cpr.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/STDINT.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/index-format.sh
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/proj4.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/glew.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/ncurses.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/sqlite-jdbc.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/pflag.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/graceful.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/folly.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/viper.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/go-toml.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/pcre.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/egl-khr.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/BLOSC.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/googletest.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/licenses/zlib.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/gdal_datum.csv
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/projop_wparm.csv
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/datum_shift.csv
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/ellipsoid.csv
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/pcs.csv
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/esri_extra.wkt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/inspire_cp_CadastralParcel.gfs
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/pcs.override.csv
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/osmconf.ini
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/s57attributes_aml.csv
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/header.dxf
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/s57objectclasses_iw.csv
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/cubewerx_extra.wkt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/compdcs.csv
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/trailer.dxf
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/s57objectclasses.csv
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/ruian_vf_st_v1.gfs
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/ozi_datum.csv
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/nitf_spec.xsd
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/gt_datum.csv
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/ruian_vf_v1.gfs
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/epsg.wkt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/nitf_spec.xml
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/geoccs.csv
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/pci_datum.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/ruian_vf_st_uvoh_v1.gfs
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/coordinate_axis.csv
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/pci_ellips.txt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/inspire_cp_CadastralBoundary.gfs
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/GDALLogoGS.svg
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/LICENSE.TXT
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/prime_meridian.csv
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/inspire_cp_CadastralZoning.gfs
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/s57attributes.csv
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/esri_StatePlane_extra.wkt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/inspire_cp_BasicPropertyUnit.gfs
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/seed_3d.dgn
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/GDALLogoColor.svg
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/ogrvrt.xsd
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/stateplane.csv
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/ecw_cs.wkt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/vertcs.override.csv
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/s57attributes_iw.csv
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/s57agencies.csv
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/GDALLogoBW.svg
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/vertcs.csv
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/gt_ellips.csv
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/gdalicon.png
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/seed_2d.dgn
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/ozi_ellips.csv
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/gcs.override.csv
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/ruian_vf_ob_v1.gfs
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/s57expectedinput.csv
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/s57objectclasses_aml.csv
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/gdalvrt.xsd
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/unit_of_measure.csv
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/esri_Wisconsin_extra.wkt
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/gcs.csv
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/ThirdParty/gdal-data/gml_registry.xml
mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open/startmapd
Removing intermediate container 93fe7700b0d3
---> 79d35d4798dc
Step 12/38 : RUN ln -s $MAPD_FILE ./mapd
---> Running in e13ef3b1ae53
Removing intermediate container e13ef3b1ae53
---> 9b4f89b84b48
Step 13/38 : ENV LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/amd64/server/:/usr/local/nvidia/lib64/
---> Running in fa2fd49e3ff0
Removing intermediate container fa2fd49e3ff0
---> 515c8e257767
Step 14/38 : RUN echo $LD_LIBRARY_PATH
---> Running in f7c1628b496a
/usr/local/nvidia/lib:/usr/local/nvidia/lib64:/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/amd64/server/:/usr/local/nvidia/lib64/
Removing intermediate container f7c1628b496a
---> 030d5952fb8f
Step 15/38 : RUN conda create -n $PYGDF_CONDA_ENV python=3.6
---> Running in 493c0812ba71
Fetching package metadata .........
Solving package specifications: .
Package plan for installation in environment /home/appuser/Miniconda3/envs/pygdf_examples:
The following NEW packages will be INSTALLED:
certifi: 2016.2.28-py36_0
openssl: 1.0.2l-0
pip: 9.0.1-py36_1
python: 3.6.2-0
readline: 6.2-2
setuptools: 36.4.0-py36_1
sqlite: 3.13.0-0
tk: 8.5.18-0
wheel: 0.29.0-py36_0
xz: 5.2.3-0
zlib: 1.2.11-0
Proceed ([y]/n)?
openssl-1.0.2l 100% |###############################| Time: 0:00:00 4.43 MB/s
readline-6.2-2 100% |###############################| Time: 0:00:00 4.93 MB/s
sqlite-3.13.0- 100% |###############################| Time: 0:00:00 4.68 MB/s
tk-8.5.18-0.ta 100% |###############################| Time: 0:00:00 4.72 MB/s
xz-5.2.3-0.tar 100% |###############################| Time: 0:00:00 4.88 MB/s
zlib-1.2.11-0. 100% |###############################| Time: 0:00:00 5.86 MB/s
python-3.6.2-0 100% |###############################| Time: 0:00:03 4.65 MB/s
certifi-2016.2 100% |###############################| Time: 0:00:00 4.86 MB/s
wheel-0.29.0-p 100% |###############################| Time: 0:00:00 4.74 MB/s
setuptools-36. 100% |###############################| Time: 0:00:00 4.94 MB/s
pip-9.0.1-py36 100% |###############################| Time: 0:00:00 4.73 MB/s
#
# To activate this environment, use:
# > source activate pygdf_examples
#
# To deactivate this environment, use:
# > source deactivate pygdf_examples
#
Removing intermediate container 493c0812ba71
---> ece37665bd07
Step 16/38 : RUN conda install -n $PYGDF_CONDA_ENV -y --no-update-deps -c numba -c defaults -c conda-forge -c gpuopenanalytics/label/dev pygdf=0.1.0a2=py36h01fc00e_29 numba=0.35 cudatoolkit=8
---> Running in a93e183a3ad1
Fetching package metadata ...............
Solving package specifications: .
Warning: 4 possible package resolutions (only showing differing packages):
- conda-forge::boost-cpp-1.67.0-0, conda-forge::icu-58.2-hfc679d8_0
- conda-forge::boost-cpp-1.67.0-0, conda-forge::icu-58.2-0
- conda-forge::boost-cpp-1.67.0-h3a22d5f_0, conda-forge::icu-58.2-hfc679d8_0
- conda-forge::boost-cpp-1.67.0-h3a22d5f_0, conda-forge::icu-58.2-0
Package plan for installation in environment /home/appuser/Miniconda3/envs/pygdf_examples:
The following NEW packages will be INSTALLED:
arrow-cpp: 0.10.0-py36h70250a7_0 conda-forge
blas: 1.0-mkl
boost-cpp: 1.67.0-0 conda-forge
bzip2: 1.0.6-3
cffi: 1.10.0-py36_0
cudatoolkit: 8.0-3 numba
icu: 58.2-hfc679d8_0 conda-forge
libffi: 3.2.1-1
libgcc-ng: 7.2.0-hdf63c60_3 conda-forge
libgdf: 0.1.0a2.dev-405 gpuopenanalytics/label/dev
libgdf_cffi: 0.1.0a2.dev-py36_405 gpuopenanalytics/label/dev
libstdcxx-ng: 7.2.0-hdf63c60_3 conda-forge
llvmlite: 0.20.0-py36_0 numba
mkl: 2017.0.3-0
numba: 0.35.0-np113py36_10 numba
numpy: 1.13.1-py36_0
pandas: 0.20.3-py36_0
parquet-cpp: 1.5.0.pre-h83d4a3d_0 conda-forge
pyarrow: 0.10.0-py36hfc679d8_0 conda-forge
pycparser: 2.18-py36_0
pygdf: 0.1.0a2-py36h01fc00e_29 gpuopenanalytics/label/dev
python-dateutil: 2.6.1-py36_0
pytz: 2017.2-py36_0
six: 1.10.0-py36_0
blas-1.0-mkl.t 100% |###############################| Time: 0:00:00 9.72 MB/s
bzip2-1.0.6-3. 100% |###############################| Time: 0:00:00 1.63 MB/s
cudatoolkit-8. 100% |###############################| Time: 0:01:13 4.59 MB/s
libffi-3.2.1-1 100% |###############################| Time: 0:00:00 4.33 MB/s
libgcc-ng-7.2. 100% |###############################| Time: 0:00:01 4.64 MB/s
libstdcxx-ng-7 100% |###############################| Time: 0:00:00 4.66 MB/s
mkl-2017.0.3-0 100% |###############################| Time: 0:00:29 4.54 MB/s
icu-58.2-hfc67 100% |###############################| Time: 0:00:05 4.51 MB/s
boost-cpp-1.67 100% |###############################| Time: 0:00:04 4.64 MB/s
llvmlite-0.20. 100% |###############################| Time: 0:00:02 4.64 MB/s
numpy-1.13.1-p 100% |###############################| Time: 0:00:01 4.65 MB/s
pycparser-2.18 100% |###############################| Time: 0:00:00 5.54 MB/s
pytz-2017.2-py 100% |###############################| Time: 0:00:00 5.27 MB/s
six-1.10.0-py3 100% |###############################| Time: 0:00:00 23.93 MB/s
arrow-cpp-0.10 100% |###############################| Time: 0:00:00 4.66 MB/s
cffi-1.10.0-py 100% |###############################| Time: 0:00:00 4.71 MB/s
numba-0.35.0-n 100% |###############################| Time: 0:00:00 4.68 MB/s
python-dateuti 100% |###############################| Time: 0:00:00 4.84 MB/s
pandas-0.20.3- 100% |###############################| Time: 0:00:04 4.65 MB/s
parquet-cpp-1. 100% |###############################| Time: 0:00:00 4.68 MB/s
pyarrow-0.10.0 100% |###############################| Time: 0:00:00 4.67 MB/s
An unexpected error has occurred.############### | Time: 0:00:01 4.63 MB/s
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Current conda install:
platform : linux-64
conda version : 4.3.11
conda is private : False
conda-env version : 4.3.11
conda-build version : not installed
python version : 3.6.0.final.0
requests version : 2.12.4
root environment : /home/appuser/Miniconda3 (writable)
default environment : /home/appuser/Miniconda3
envs directories : /home/appuser/Miniconda3/envs
/home/appuser/.conda/envs
package cache : /home/appuser/Miniconda3/pkgs
/home/appuser/.conda/pkgs
channel URLs : https://conda.anaconda.org/numba/linux-64
https://conda.anaconda.org/numba/noarch
https://repo.continuum.io/pkgs/free/linux-64
https://repo.continuum.io/pkgs/free/noarch
https://repo.continuum.io/pkgs/r/linux-64
https://repo.continuum.io/pkgs/r/noarch
https://repo.continuum.io/pkgs/pro/linux-64
https://repo.continuum.io/pkgs/pro/noarch
https://conda.anaconda.org/conda-forge/linux-64
https://conda.anaconda.org/conda-forge/noarch
https://conda.anaconda.org/gpuopenanalytics/label/dev/linux-64
https://conda.anaconda.org/gpuopenanalytics/label/dev/noarch
config file : None
offline mode : False
user-agent : conda/4.3.11 requests/2.12.4 CPython/3.6.0 Linux/4.4.0-138-generic debian/stretch/sid glibc/2.23
UID:GID : 1000:1000
`$ /home/appuser/Miniconda3/bin/conda install -n pygdf_examples -y --no-update-deps -c numba -c defaults -c conda-forge -c gpuopenanalytics/label/dev pygdf=0.1.0a2=py36h01fc00e_29 numba=0.35 cudatoolkit=8`
Traceback (most recent call last):
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/exceptions.py", line 616, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/cli/main.py", line 137, in _main
exit_code = args.func(args, p)
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/cli/main_install.py", line 80, in execute
install(args, parser, 'install')
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/cli/install.py", line 359, in install
execute_actions(actions, index, verbose=not context.quiet)
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/plan.py", line 825, in execute_actions
execute_instructions(plan, index, verbose)
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/instructions.py", line 258, in execute_instructions
cmd(state, arg)
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/instructions.py", line 118, in UNLINKLINKTRANSACTION_CMD
txn = UnlinkLinkTransaction.create_from_dists(index, prefix, unlink_dists, link_dists)
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/core/link.py", line 123, in create_from_dists
for dist, pkg_dir in zip(link_dists, pkg_dirs_to_link))
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/core/link.py", line 123, in <genexpr>
for dist, pkg_dir in zip(link_dists, pkg_dirs_to_link))
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/gateways/disk/read.py", line 88, in read_package_info
paths_data = read_paths_json(extracted_package_directory)
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/gateways/disk/read.py", line 150, in read_paths_json
paths=(PathDataV1(**f) for f in data['paths']),
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/_vendor/auxlib/entity.py", line 702, in __call__
instance = super(EntityType, cls).__call__(*args, **kwargs)
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/_vendor/auxlib/entity.py", line 719, in __init__
setattr(self, key, kwargs[key])
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/_vendor/auxlib/entity.py", line 424, in __set__
instance.__dict__[self.name] = self.validate(instance, self.box(instance, val))
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/_vendor/auxlib/entity.py", line 581, in box
return self._type(v if isinstance(v, et) else et(**v) for v in val)
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/_vendor/auxlib/entity.py", line 581, in <genexpr>
return self._type(v if isinstance(v, et) else et(**v) for v in val)
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/gateways/disk/read.py", line 150, in <genexpr>
paths=(PathDataV1(**f) for f in data['paths']),
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/_vendor/auxlib/entity.py", line 702, in __call__
instance = super(EntityType, cls).__call__(*args, **kwargs)
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/_vendor/auxlib/entity.py", line 719, in __init__
setattr(self, key, kwargs[key])
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/_vendor/auxlib/entity.py", line 424, in __set__
instance.__dict__[self.name] = self.validate(instance, self.box(instance, val))
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/_vendor/auxlib/entity.py", line 465, in validate
raise ValidationError(getattr(self, 'name', 'undefined name'), val)
conda._vendor.auxlib.exceptions.ValidationError: Value for sha256 cannot be None.
libgdf-0.1.0a2 100% |###############################| Time: 0:00:01 4.64 MB/s
libgdf_cffi-0. 100% |###############################| Time: 0:00:00 4.84 MB/s
pygdf-0.1.0a2- 100% |###############################| Time: 0:00:00 4.24 MB/s
The command '/bin/bash -c conda install -n $PYGDF_CONDA_ENV -y --no-update-deps -c numba -c defaults -c conda-forge -c gpuopenanalytics/label/dev pygdf=0.1.0a2=py36h01fc00e_29 numba=0.35 cudatoolkit=8' returned a non-zero code: 1
Docker build - CondaError MD5Mismatch
docker build -t cudf:latest ./demo failed with error
CondaError: MD5MismatchError: Conda detected a mismatch between the expected content and downloaded content
for url 'https://repo.continuum.io/pkgs/free/linux-64/numpy-1.12.1-py35_0.tar.bz2'.
download saved to: /home/appuser/Miniconda3/pkgs/numpy-1.12.1-py35_0.tar.bz2
expected md5 sum: fa544a6d6b3df642d335d76a05f761d8
actual md5 sum: 099c631c5a2a814bf2099c1d0cdf7a00
Build failure from "docker build -t goai/demo:latest ./demo"
Hi !
I was able to execute the first command "docker build -t goai/base:latest ./base" without any problems
but I got this errors from the second one "docker build -t goai/demo:latest ./demo":
[aguerzaa@naboo15 (NABOO) notebook-demo-docker]$ docker build -t cudf:latest ./demo
Sending build context to Docker daemon 11.85MB
Step 1/42 : FROM goai/base:latest
---> d2375a936579
Step 2/42 : ENV PYGDF_CONDA_ENV=pygdf_examples
---> Using cache
---> 78e3b1de3c89
Step 3/42 : ENV http_proxy 'http://129.183.4.8:8080'
---> Using cache
---> d27a67580071
Step 4/42 : ENV https_proxy 'http://129.183.4.8:8080'
---> Using cache
---> a1ab2ea44146
Step 5/42 : ENV HTTP_PROXY 'http://129.183.4.8:8080'
---> Using cache
---> 44e57b2584a3
Step 6/42 : ENV HTTPS_PROXY 'http://129.183.4.8:8080'
---> Using cache
---> 1e680529c432
Step 7/42 : USER appuser
---> Using cache
---> 42f86fbf3053
Step 8/42 : RUN mkdir data
---> Using cache
---> 56c65336ce7c
Step 9/42 : RUN wget -nv http://archive.ics.uci.edu/ml/machine-learning-databases/00344/Activity%20recognition%20exp.zip -O "data/Activity recognition exp.zip"
---> Using cache
---> 7076547181f1
Step 10/42 : ENV MAPD_FILE="mapd-os-3.2.3dev-20170909-e7053e6-Linux-x86_64-open"
---> Using cache
---> 8097a59a0958
Step 11/42 : ADD https://mapd-core-os-builds.s3.amazonaws.com/${MAPD_FILE}.tar.gz ${MAPD_FILE}.tar.gz
Downloading [==================================================>] 83.12MB/83.12MB
---> Using cache
---> 377177b5e47a
Step 12/42 : USER root
---> Using cache
---> 903f541bed4f
Step 13/42 : RUN chown appuser ${MAPD_FILE}.tar.gz
---> Using cache
---> e8028594015e
Step 14/42 : USER appuser
---> Using cache
---> 25be426113b7
Step 15/42 : RUN tar -xvf ${MAPD_FILE}.tar.gz
---> Using cache
---> 0d5d7f23d7f7
Step 16/42 : RUN ln -s $MAPD_FILE ./mapd
---> Using cache
---> 7149d051f70c
Step 17/42 : ENV LD_LIBRARY_PATH=$LD_LIBRARY_PATH:/usr/lib/jvm/java-7-openjdk-amd64/jre/lib/amd64/server/:/usr/local/nvidia/lib64/
---> Using cache
---> c72b566c1a88
Step 18/42 : RUN echo $LD_LIBRARY_PATH
---> Using cache
---> 44ac717e5157
Step 19/42 : RUN conda create -n $PYGDF_CONDA_ENV python=3.6
---> Using cache
---> f8af5f8bd1c7
Step 20/42 : RUN conda install -n $PYGDF_CONDA_ENV -y --no-update-deps -c numba -c defaults -c conda-forge -c gpuopenanalytics/label/dev pygdf=0.1.0a2=py36h01fc00e_29 numba=0.35 cudatoolkit=8
---> Running in 4642d2aa1ea3
Fetching package metadata ...............
Solving package specifications: .
Warning: 4 possible package resolutions (only showing differing packages):
- conda-forge::boost-cpp-1.67.0-0, conda-forge::icu-58.2-hfc679d8_0
- conda-forge::boost-cpp-1.67.0-0, conda-forge::icu-58.2-0
- conda-forge::boost-cpp-1.67.0-h3a22d5f_0, conda-forge::icu-58.2-hfc679d8_0
- conda-forge::boost-cpp-1.67.0-h3a22d5f_0, conda-forge::icu-58.2-0
Package plan for installation in environment /home/appuser/Miniconda3/envs/pygdf_examples:
The following NEW packages will be INSTALLED:
arrow-cpp: 0.10.0-py36h70250a7_0 conda-forge
blas: 1.0-mkl
boost-cpp: 1.67.0-0 conda-forge
bzip2: 1.0.6-3
cffi: 1.10.0-py36_0
cudatoolkit: 8.0-3 numba
icu: 58.2-hfc679d8_0 conda-forge
libffi: 3.2.1-1
libgcc-ng: 7.2.0-hdf63c60_3 conda-forge
libgdf: 0.1.0a2.dev-405 gpuopenanalytics/label/dev
libgdf_cffi: 0.1.0a2.dev-py36_405 gpuopenanalytics/label/dev
libstdcxx-ng: 7.2.0-hdf63c60_3 conda-forge
llvmlite: 0.20.0-py36_0 numba
mkl: 2017.0.3-0
numba: 0.35.0-np113py36_10 numba
numpy: 1.13.1-py36_0
pandas: 0.20.3-py36_0
parquet-cpp: 1.5.0.pre-h83d4a3d_0 conda-forge
pyarrow: 0.10.0-py36hfc679d8_0 conda-forge
pycparser: 2.18-py36_0
pygdf: 0.1.0a2-py36h01fc00e_29 gpuopenanalytics/label/dev
python-dateutil: 2.6.1-py36_0
pytz: 2017.2-py36_0
six: 1.10.0-py36_0
blas-1.0-mkl.t 100% |###############################| Time: 0:00:00 2.09 MB/s
bzip2-1.0.6-3. 100% |###############################| Time: 0:00:00 1.94 MB/s
cudatoolkit-8. 100% |###############################| Time: 0:02:11 2.58 MB/s
libffi-3.2.1-1 100% |###############################| Time: 0:00:00 2.46 MB/s
libgcc-ng-7.2. 100% |###############################| Time: 0:00:02 2.58 MB/s
libstdcxx-ng-7 100% |###############################| Time: 0:00:01 2.06 MB/s
mkl-2017.0.3-0 100% |###############################| Time: 0:01:00 2.26 MB/s
icu-58.2-hfc67 100% |###############################| Time: 0:00:04 4.95 MB/s
boost-cpp-1.67 100% |###############################| Time: 0:00:03 6.80 MB/s
llvmlite-0.20. 100% |###############################| Time: 0:00:01 7.10 MB/s
numpy-1.13.1-p 100% |###############################| Time: 0:00:01 4.53 MB/s
pycparser-2.18 100% |###############################| Time: 0:00:00 8.08 MB/s
pytz-2017.2-py 100% |###############################| Time: 0:00:00 10.57 MB/s
six-1.10.0-py3 100% |###############################| Time: 0:00:00 20.49 MB/s
arrow-cpp-0.10 100% |###############################| Time: 0:00:00 4.83 MB/s
cffi-1.10.0-py 100% |###############################| Time: 0:00:00 3.25 MB/s
numba-0.35.0-n 100% |###############################| Time: 0:00:01 2.23 MB/s
python-dateuti 100% |###############################| Time: 0:00:00 1.42 MB/s
pandas-0.20.3- 100% |###############################| Time: 0:00:34 642.96 kB/s
parquet-cpp-1. 100% |###############################| Time: 0:00:02 491.66 kB/s
pyarrow-0.10.0 100% |###############################| Time: 0:00:02 713.06 kB/s
An unexpected error has occurred.############### | Time: 0:00:06 1.08 MB/s
Please consider posting the following information to the
conda GitHub issue tracker at:
https://github.com/conda/conda/issues
Current conda install:
platform : linux-64
conda version : 4.3.11
conda is private : False
conda-env version : 4.3.11
conda-build version : not installed
python version : 3.6.0.final.0
requests version : 2.12.4
root environment : /home/appuser/Miniconda3 (writable)
default environment : /home/appuser/Miniconda3
envs directories : /home/appuser/Miniconda3/envs
/home/appuser/.conda/envs
package cache : /home/appuser/Miniconda3/pkgs
/home/appuser/.conda/pkgs
channel URLs : https://conda.anaconda.org/numba/linux-64
https://conda.anaconda.org/numba/noarch
https://repo.continuum.io/pkgs/free/linux-64
https://repo.continuum.io/pkgs/free/noarch
https://repo.continuum.io/pkgs/r/linux-64
https://repo.continuum.io/pkgs/r/noarch
https://repo.continuum.io/pkgs/pro/linux-64
https://repo.continuum.io/pkgs/pro/noarch
https://conda.anaconda.org/conda-forge/linux-64
https://conda.anaconda.org/conda-forge/noarch
https://conda.anaconda.org/gpuopenanalytics/label/dev/linux-64
https://conda.anaconda.org/gpuopenanalytics/label/dev/noarch
config file : None
offline mode : False
user-agent : conda/4.3.11 requests/2.12.4 CPython/3.6.0 Linux/3.10.0-693.17.1.el7.x86_64 debian/stretch/sid glibc/2.23
UID:GID : 1000:1000
$ /home/appuser/Miniconda3/bin/conda install -n pygdf_examples -y --no-update-deps -c numba -c defaults -c conda-forge -c gpuopenanalytics/label/dev pygdf=0.1.0a2=py36h01fc00e_29 numba=0.35 cudatoolkit=8
Traceback (most recent call last):
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/exceptions.py", line 616, in conda_exception_handler
return_value = func(*args, **kwargs)
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/cli/main.py", line 137, in _main
exit_code = args.func(args, p)
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/cli/main_install.py", line 80, in execute
install(args, parser, 'install')
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/cli/install.py", line 359, in install
execute_actions(actions, index, verbose=not context.quiet)
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/plan.py", line 825, in execute_actions
execute_instructions(plan, index, verbose)
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/instructions.py", line 258, in execute_instructions
cmd(state, arg)
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/instructions.py", line 118, in UNLINKLINKTRANSACTION_CMD
txn = UnlinkLinkTransaction.create_from_dists(index, prefix, unlink_dists, link_dists)
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/core/link.py", line 123, in create_from_dists
for dist, pkg_dir in zip(link_dists, pkg_dirs_to_link))
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/core/link.py", line 123, in <genexpr>
for dist, pkg_dir in zip(link_dists, pkg_dirs_to_link))
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/gateways/disk/read.py", line 88, in read_package_info
paths_data = read_paths_json(extracted_package_directory)
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/gateways/disk/read.py", line 150, in read_paths_json
paths=(PathDataV1(**f) for f in data['paths']),
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/_vendor/auxlib/entity.py", line 702, in __call__
instance = super(EntityType, cls).__call__(*args, **kwargs)
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/_vendor/auxlib/entity.py", line 719, in __init__
setattr(self, key, kwargs[key])
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/_vendor/auxlib/entity.py", line 424, in __set__
instance.__dict__[self.name] = self.validate(instance, self.box(instance, val))
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/_vendor/auxlib/entity.py", line 581, in box
return self._type(v if isinstance(v, et) else et(**v) for v in val)
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/_vendor/auxlib/entity.py", line 581, in <genexpr>
return self._type(v if isinstance(v, et) else et(**v) for v in val)
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/gateways/disk/read.py", line 150, in <genexpr>
paths=(PathDataV1(**f) for f in data['paths']),
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/_vendor/auxlib/entity.py", line 702, in __call__
instance = super(EntityType, cls).__call__(*args, **kwargs)
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/_vendor/auxlib/entity.py", line 719, in __init__
setattr(self, key, kwargs[key])
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/_vendor/auxlib/entity.py", line 424, in __set__
instance.__dict__[self.name] = self.validate(instance, self.box(instance, val))
File "/home/appuser/Miniconda3/lib/python3.6/site-packages/conda/_vendor/auxlib/entity.py", line 465, in validate
raise ValidationError(getattr(self, 'name', 'undefined name'), val)
conda._vendor.auxlib.exceptions.ValidationError: Value for sha256 cannot be None.
libgdf-0.1.0a2 100% |###############################| Time: 0:00:06 1.14 MB/s
libgdf_cffi-0. 100% |###############################| Time: 0:00:00 6.42 MB/s
pygdf-0.1.0a2- 100% |###############################| Time: 0:00:00 2.89 MB/s
The command '/bin/bash -c conda install -n $PYGDF_CONDA_ENV -y --no-update-deps -c numba -c defaults -c conda-forge -c gpuopenanalytics/label/dev pygdf=0.1.0a2=py36h01fc00e_29 numba=0.35 cudatoolkit=8' returned a non-zero code: 1
PS: I have cuda-9.2 installed in my machine and all the GPU drivers are updated
Any help will be appreciated
Best regards
aguerzaa
How to understand as_df()
When I debug the program to line 124, I get the error:
{AttributeError}'LibGdfGroupby' object has no attribute 'as_df'
Here the code is in the sample har_dataset_pygdf_h2o4gpu.ipynb
How can I solve this problem?
Demo container fails to build, missing data?
Looks like the container is not able to find the dataset, the base container builds ok, but the demo fails with a timeout, as of 9/25/2017 anyway
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