This project forked from hoohm/cite-seq-count
A tool that allows to get UMI counts from a single cell protein assay
Home Page: https://hoohm.github.io/CITE-seq-Count/
License: MIT License
A python package that allows to count antibody TAGS from a CITE-seq and/or cell hashing experiment.
There was a major bug in version 1.3.4 of CITE-seq-Count. The results were in read counts and not in UMI counts.
This is fixed in version 1.4.0 or above. Please rerun your data as this might provide a cleaner result for your data.
Here is the website referencing the wetlab protocols needed https://cite-seq.com/
pip install CITE-seq-Count==1.4.5
The official documentation can be found here
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