Git Product home page Git Product logo

bbimber's Projects

conga icon conga

Clonotype Neighbor Graph Analysis

demuxem icon demuxem

Demultiplexing cell/nucleus hashing data for single-cell genomics

gatk icon gatk

Official code repository for GATK versions 4 and up

gatk-protected icon gatk-protected

GATK Official Release Repository: contains the core MIT-licensed GATK framework, plus "protected" tools restricted to non-commercial use only

hdwgcna icon hdwgcna

High dimensional weighted gene co-expression network analysis

htsjdk icon htsjdk

A Java API for high-throughput sequencing data (HTS) formats.

jbrowse icon jbrowse

A modern genome browser built with JavaScript and HTML5.

jbrowse-components icon jbrowse-components

Monorepo with JBrowse 2 web, JBrowse 2 desktop, the JB core package, core plugins, and more.

library-imgt icon library-imgt

IMGT segment library converted to RepSeq.IO JSON format

mixcr icon mixcr

MiXCR is a universal software for fast and accurate analysis of T- and B- cell receptor repertoire sequencing data.

onprcehrmodules icon onprcehrmodules

LabKey Server modules used by the Oregon National Primate Research Center for their primate EHR and other functionality

pegasusio icon pegasusio

pegasus io module for reading/writing single-cell genomics data

picard icon picard

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

platform icon platform

A set of modules that provide core functionality for LabKey Server

remotes icon remotes

Install R packages from GitHub, GitLab, Bitbucket, git, svn repositories, URLs

rnaseqc icon rnaseqc

RNA-SeQC v1 — Please upgrade to v2: https://github.com/broadinstitute/rnaseqc

rtest icon rtest

A dummy repo to for R CMD check exit code

scgate icon scgate

marker-based purification of cell types from single-cell RNA-seq datasets

scmetabolism icon scmetabolism

Quantifying metabolism activity at the single-cell resolution

server icon server

Top-level classes and configuration files for LabKey Server.

seurat icon seurat

R toolkit for single cell genomics

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.