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jacekzkominek avatar jacekzkominek commented on June 7, 2024

I am actually encountering this problem right now, and unfortunately neither the Conda, PIP or Git versions are working. I even went back a few versions, and it's still the same error - "ValueError: too many values to unpack". I know the input files are fine because a colleague run Clinker on them just fine. Maybe it's one of the dependencies that is causing this? I am running Clinker on MacOS 13.0.1, if that helps at all.

EDIT. Ok, I figured it out - turns out the culprit was biopython, for some reason. It errors out when the currently latest version is used, i.e. v1.80. Force-installing an earlier version (e.g. pip install biopython==1.79) resolved the issue.

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gamcil avatar gamcil commented on June 7, 2024

Thanks for picking this up. Looks like clinker was a casualty of this change in v1.80 biopython/biopython#4183. I've just released version 0.0.26 of clinker (should be on PyPI shortly) which should fix the issue for pre/post 1.80.

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jacekzkominek avatar jacekzkominek commented on June 7, 2024

Lovely, glad you were able to track it down, and thanks for the fix!

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