Comments (1)
That should not be a problem. There is no hard limit, just that the alignment method clinker uses is not going to be efficient for larger regions (e.g. whole genomic contigs). You should be able to see the block of deleted genes in the clinker output (since there will be no genes in that region), but there is no built in method to highlight it. You would have to do that in external software.
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Related Issues (20)
- Similarity score and plotting HOT 1
- Can't save changes to session HOT 2
- update 0.0.28 HOT 3
- the legend HOT 4
- How to visualize a gene on a large chromosome?
- Use clinker to visualize individual exons rather than whole gene?
- ValueError: not enough values to unpack (expected 2, got 1)
- Error in clinker HTML plotting function
- Errors in using gff and faa file
- The output result has no information HOT 4
- some issues for -mo --matrix_out parameter HOT 2
- Locus inversion showing incorrect locations
- Possible bug in cluster similarity output (-mo option)
- -gf/--gene_functions not working?
- Problem with -gf and -cm parameteres HOT 3
- try example encouter error
- Broken pipe error when using clinker to plot gene clusters HOT 2
- Renaming coding sequence back to gene number HOT 3
- Running clinker via spyder
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