Comments (3)
Could you upload one of the GFF files you are using here?
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Yes, this is header of the 1_2.gff i used which is generated by Prodigal.
from clinker.
Looks like the error was clinker not looking for uppercase ID fields. This should be fixed with clinker v0.0.29.
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Related Issues (20)
- Similarity score and plotting HOT 1
- Can't save changes to session HOT 2
- update 0.0.28 HOT 3
- the legend HOT 4
- How to visualize a gene on a large chromosome?
- Use clinker to visualize individual exons rather than whole gene?
- ValueError: not enough values to unpack (expected 2, got 1)
- Error in clinker HTML plotting function
- Errors in using gff and faa file
- The output result has no information HOT 4
- some issues for -mo --matrix_out parameter HOT 2
- Locus inversion showing incorrect locations
- Possible bug in cluster similarity output (-mo option)
- -gf/--gene_functions not working?
- Problem with -gf and -cm parameteres HOT 3
- try example encouter error
- Gene and species limit HOT 1
- Broken pipe error when using clinker to plot gene clusters HOT 2
- Running clinker via spyder
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