Comments (2)
I figured out what was causing the problem and it is not on clinker but rather with cblaster. It looks like the extract_clusters module within cblaster had the annotation off by a single bp on the 3' end of the CDS in the gbk files which resulted in the translations being messed up for some of the genes as they didn't start in the correct place.
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Ah thank you for the information @galacmr, will fix the issue in cblaster. The grouping is just done purely by protein similarity, so a bunch of wrong translations would definitely mess it up.
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Related Issues (20)
- Circular sequence panning
- Questions
- Using clinker in windows Cmd shell, only alignement of last name sequences HOT 5
- Feature request: set font style, link color and gene color
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- docs on gff+fasta HOT 2
- clustermap loading slow HOT 1
- How to only generate html files? HOT 2
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- Similarity score and plotting HOT 1
- Can't save changes to session HOT 2
- update 0.0.28 HOT 3
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- How to visualize a gene on a large chromosome?
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- ValueError: not enough values to unpack (expected 2, got 1)
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