Comments (2)
I second Nick here. The tool looks promising but the Readme is quite poor/outdated. The help message has also not been updated. The issue of parsing fails when no CDS is reported for a particular contig also still remains as mentioned in issue #10 (ValueError: Found no CDS features in NODE_29_length_767_cov_1.376562 [rhodo-clean.gff])
I would really like the tool, but some support here is appreciated
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Sorry about the delay. Have added a note to the readme about GFF support, also added a fix as of 0.0.25 so it shouldn't crash when no CDS features are found parsing GFF records (#10). Have also updated the help in the README, a note about tool scope and some description of the gene function group functionality. Any other suggestions for improvements to the README @arghya1611 ?
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Related Issues (20)
- Errors in using gff and faa file
- Using clinker in windows Cmd shell, only alignement of last name sequences HOT 5
- Feature request: set font style, link color and gene color
- Clink does not show any features HOT 1
- Clinker usage HOT 9
- Export SVG instead of html
- clustermap loading slow HOT 1
- How to only generate html files? HOT 2
- Clinker issue: Blocks instead of arrows HOT 2
- protein groups and similarity HOT 2
- Conda package errors HOT 3
- Similarity score and plotting HOT 1
- Can't save changes to session HOT 2
- update 0.0.28 HOT 3
- the legend HOT 4
- How to visualize a gene on a large chromosome?
- Use clinker to visualize individual exons rather than whole gene?
- ValueError: not enough values to unpack (expected 2, got 1)
- Error in clinker HTML plotting function
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