gagneurlab / mmsplice_paper Goto Github PK

Hello,

I am currently using MMSplice for my research and encountered an issue when loading the models. My MMSplice version matches the one specified in the env.yaml file in the repository.

I tried to run the following code:

exonM5 = load_model(mmsplice.EXON) exonM3 = load_model(mmsplice.EXON3)

However, I encountered the following errors:

AttributeError Traceback (most recent call last) <ipython-input-53-08118d5956f3> in <module>() 1 exonM5 = load_model(mmsplice.EXON) ----> 2 exonM3 = load_model(mmsplice.EXON3) AttributeError: module 'mmsplice' has no attribute 'EXON3'

Additionally, when I tried to get help on mmsplice.EXON, I received a message indicating that no Python documentation was found for the '/opt/conda/lib/python3.6/site-packages/mmsplice/models/Exon.h5' file.

Steps to Reproduce:

Use the MMSplice version specified in env.yaml.
Run the code provided above.

Environment:

Python version: 3.6
TensorFlow version: 1.11.0
MMSplice version: as specified in env.yaml

Screenshots:

Request:

Could you please provide guidance on resolving this issue? Is there a specific version of TensorFlow or other dependencies that I should be using to avoid this error?

Thank you for your assistance.

Best regards,

Shanshuimei