fstrozzi / gmap Goto Github PK
View Code? Open in Web Editor NEWRuby class to manage the Gmap output
Ruby class to manage the Gmap output
Author: Francesco Strozzi Copyright: 2008 Francesco Strozzi License: The Ruby License This module allows the parsing of the standard output of Gmap (http://www.gene.com/share/gmap/) Example: Gmap::Core.open("output.gmap") do |gmap| gmap.each_sequence do |seq| seq.each do |result| result.query (Query sequence name) result.target (Target sequence name) result.q_start (Start coordinate of the query sequence) result.q_end (End coordinate of the query sequence) result.start (Start coordintate of the target sequence) result.end (End coordinate of the target sequence) result.strand (Strand of the target sequence) result.exons (# exons found) result.coverage (Coverage of the query sequence) result.perc_identity (Pecentage of identity from the alignment) result.indels (# insertion or deletions) result.mismatch (# mismatch) result.aa_change (Prediction of AA changes from mismatches and indels found) result.aln (Raw alignment between target and query sequences) ONLY IF GENE MAPS ARE USED WITH GMAP result.gene_start (Start coordinate of the overlapping gene) result.gene_end (End coordinate of the overlapping gene) result.gene_id (ID of the overlapping gene) end end end
A declarative, efficient, and flexible JavaScript library for building user interfaces.
๐ Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. ๐๐๐
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google โค๏ธ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.