fstrozzi Goto Github PK
Name: Francesco Strozzi
Type: User
Bio: Working on large scale data analysis, biotechnology, health & metagenomics
Location: Paris, France
Francesco Strozzi's Projects
bio-hub-rails
A gem to centralize and connect all the Bio* analyses
bio-sparql-otf
Run SPARQL queries on biological data converting them in RDF On The Fly
biointerchange
Generates interchangeable RDF from non-RDF data sources.
bioruby-assembly
Bioruby plugin for reading, writing and manipulating assembly data
bioruby-bwa
Ruby binding to BWA fast mapping software
bioruby-ensembl
BioRuby plugin for the Ruby Ensembl API
bioruby-faster
A fast and simple parser for Fasta / FastQ files
bioruby-gfastqc
Bioinformatics. Aggregate FastQC (quality control for Next Generation Sequencing -NGS-) results from many different samples in a single web page, with charts and tables organized and simplified. The main goal is to speed up the communication process with colleagues (PIs, Biologists, BioInformaticians).
bioruby-grid
Tool to create and distribute jobs on a queue system
bioruby-heatmap
A JRuby BioGem built around JHeatMap
bioruby-hub
A BioRuby plugin to describe and centralize bioinformatics analysis
bioruby-pipengine
An ultra light YAML-based pipeline execution engine
bioruby-scheduler
A distributed pipeline management engine for JRuby
bioruby-vcf2rdf
Simple converter from VCF format to RDF turtle format
bioruby-wake
BioRuby Workflow extension using Rake
bioscala
Bioinformatics for the Scala programming language
ciheam2015
Code and tutorials for CIHEAM course. Variation calling and filtering session
d3sparql
JavaScript library for executing SPARQL query and transforming resulted JSON for visualization in D3.js
data-science-at-the-command-line
Data Science at the Command Line
dnacodes
Hamming EC DNA Barcodes for NGS applications
dockerfiles
Personal repo for Dockerfiles
dotfiles
dotvim
Personal VIM configuration, plugins and themes
dotvim-vundle
ds-cheatsheets
List of Data Science Cheatsheets to rule the world
faldo-paper
fastool
Simple and quick FastQ and FastA tool for file reading and conversion
fstrozzi.github.io
gbs_demultiplexer
Custom demultiplexer for GBS Illumina reads
gmap
Ruby class to manage the Gmap output
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