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nigri_homolog_families

Algorithm for generating fungal protein homolog families. Vesth et al, Nature Genetics 2018

nigri_smgc_analysis

Algorithm for generating fungal gene cluster families. Vesth et al, Nature Genetics 2018

nocode

The best way to write secure and reliable applications. Write nothing; deploy nowhere.

nutrient_calculator

Code for a shinyapp that calculates nutrition values for food and recipes

nvenn

ontologyeval

OntologyEval is an approach that can be used to compare batch effect correction of normalisation methods for cell heterogeneous genome-wide datasets, like RNA-seq. It uses the cell ontology to evaluate whether datasets derived from different cell types are similar to one another.

openbabel

Open Babel is a chemical toolbox designed to speak the many languages of chemical data.

openbiomed

openfold

Trainable, memory-efficient, and GPU-friendly PyTorch reproduction of AlphaFold 2

openms

The codebase of the OpenMS project

optimus

Workflow for LC-MS feature analysis and spatial mapping

orca

:whale: Genomics Research Container Architecture

organoid_regulomes

Reproducibility code for the manuscript: 'Inferring and perturbing cell fate regulomes in human cerebral organoids

orthofinder

Accurate inference of orthologous gene groups made easy. "OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthologous gene group inference accuracy"

osca.advanced

Advanced steps of the OSCA book

osca.multisample

The multi-sample subbook of OSCA

osca.workflows

Workflows for the OSCA book.

pactolus

Pactolus

paperrobot

Code for PaperRobot: Incremental Draft Generation of Scientific Ideas

paraphrase-generation

Open-sourced implementation of this paper: https://goo.gl/EQLgnT

paraphraser

Paraphrase Chinese sentences

paraphraser-1

Sentence paraphrase generation at the sentence level

pcls_perturbations

pda

pda - Proteomics Data Analysis

pdbfixer

PDBFixer fixes problems in PDB files

pdbqt-to-mol2

convert autodock ligand pdbqt to mol2 with original mol2 as reference

pdbqt_maker

This repo contains script for converting all the files in the folder of the formats sdf, pdb and mol2 to pdbqt

peixoto2015_tutorial

Tutorial to reproduce the analysis of Peixoto et al. (2015)

penicillium

Code available for Nielsen et al. 2017 Nature Microbiology

peptidemethods

A collection of methods to work with peptides in R