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direct-5d-viewer's Introduction

Making Images Come to Light

Hi there

My name is Eric Wait, see my life's story here. I currently work at a startup called Elephas Bio. More details to come when I can share them ๐Ÿ˜„.

I was formally an image analysis programmer and consultant with the Advanced Imaging Center at Janelia which is a HHMI campus. The Advanced Imaging Center provides access to newly developed microscopes free to the rest of the world (see applications). The microscopes available produce data beyond what is capable with commercial microscopes. For this reason, I assist visitors on how to best process this data in a way that directly relates to their stated hypothesis.

The repositories that I maintain here are tools and processes that I have found useful for image processing. Notable repositories are:

  • Hydra Image Processor - a GPU accelerated image filtering toolkit that can be accessed from MATLAB or Python.
  • Direct 5-D Viewer - a DirectX viewer accessed from MATLAB that displays up to 5-D images. This viewer is best for transparent images (i.e. not EM data).
  • Matlab Utilities - a collection of Matlab functions that assist with image processing.

Toolboxes ๐Ÿงฐ

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direct-5d-viewer's Issues

Error reporting for undersized textures

When calling LoadImage with a memory block that is smaller than the number of channels and frames to be loaded, an error message should be produced. Alternatively, the data could be zero padded.

Write documentation

There needs to be some documentation to guide the user to the correct dependencies. Also, a set of starting points would be useful.

Create a time display

The current frame display in the upper right corner. There should be an option to display the time delta from the first frame as well.

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