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Making Images Come to Light

Hi there

My name is Eric Wait, see my life's story here. I currently work at a startup called Elephas Bio. More details to come when I can share them 😄.

I was formally an image analysis programmer and consultant with the Advanced Imaging Center at Janelia which is a HHMI campus. The Advanced Imaging Center provides access to newly developed microscopes free to the rest of the world (see applications). The microscopes available produce data beyond what is capable with commercial microscopes. For this reason, I assist visitors on how to best process this data in a way that directly relates to their stated hypothesis.

The repositories that I maintain here are tools and processes that I have found useful for image processing. Notable repositories are:

  • Hydra Image Processor - a GPU accelerated image filtering toolkit that can be accessed from MATLAB or Python.
  • Direct 5-D Viewer - a DirectX viewer accessed from MATLAB that displays up to 5-D images. This viewer is best for transparent images (i.e. not EM data).
  • Matlab Utilities - a collection of Matlab functions that assist with image processing.

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Eric Wait's Projects

4d-frap-calculator icon 4d-frap-calculator

Calculate Fluorescence Recovery After Photobleaching (FRAP) curves using 4d (x,y,z,t) microscope images.

general-notes icon general-notes

A place to keep useful notes that deal with technology, computing, and image processing

matlab-utilities icon matlab-utilities

Many useful helper functions when working with microscope data in MATLAB

one-offs icon one-offs

A collection of one-off scripts (a.k.a our junk drawer)

python-utilities icon python-utilities

Helpful python utility functions for image processing with emphasis on light microscopy imaging.

usa-constitution icon usa-constitution

A history of edits to the US Constitution as it has been amended. Written in markdown to match original formatting.

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