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Transposons in the Infant Gut Microbiome

This repository contains an analysis notebook, scripts, and resulting files for investigating transposons and putative HGT in the infant gut microbiome. Folders are as follows:

  • results/ Results produced throughout the project and referenced in the notebook
  • raw_data/ Raw data to start project and raw FASTA files generated
  • figures/ Main resulting figures
  • beatrix-1-5_v1_all/ Reformatted database file for mobile elements identification
  • infant_gut_notebook Notebook of analysis steps and code in HTML, PDF, and Rmarkdown formats
  • slides/ PPT and PDF slides summarizing main steps and findings of this analysis

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