elizabethmcd Goto Github PK
Name: Elizabeth McDaniel
Type: User
Company: Arcadia Science
Bio: Scientist @ Arcadia Science working on computational discovery.
Twitter: lizilla93
Location: Berkeley, CA
Name: Elizabeth McDaniel
Type: User
Company: Arcadia Science
Bio: Scientist @ Arcadia Science working on computational discovery.
Twitter: lizilla93
Location: Berkeley, CA
Slides and R code for teaching Intro to R for REU Data Carpentry @ UW-Madison on 2019-06-27
Microbial community analysis of a lab-scale SBR simulating EBPR
Microdiversity and population structure of Accumulibacter using genome-resolved metagenomics
Searching for algae in Lake Mendota time series collab
Directory setup to run mass ani comparisons on HTcondor system
Glossary of Docker builds that are either maintained or used by Arcadia
Directed Acyclic Workflow Manager for running BLAST all-v-all on HTCondor
Instructions and shell scripts for configuration and setup of CCI VM
Elizabeth McDaniel CV
Extracting, refining, and utilizing MAGs from EBPR reactor metagenomic time-series
Personal website built with Quarto
Creation of a database of Genbank genomes including isolate reference genomes and MAGs, and parallelizing 1000s of genome searches for a specific marker
Lesson materials for creating a personal website with Github Pages
Transposons in the infant gut microbiome analysis
Microbial community analysis of Lake Mendota during winter months for Kali Denis' undergraduate project
Reassembly and binning of lake metagenomes from GEODES, MEHYPO, and the historical time-series metagenomics projects
Pipeline for mapping a bunch of metagenomes to a bunch of reference genomes with bbmap. Then calculating the average percent identity and coverage values for all.
Teaching module on genome-resolved metagenomic binning
Exploring the phylogenetic and metabolic diversity of microbial mercury methylation
Tool for constructing phylogenies and summarizing metabolic characteristics based on curated and custom profile HMMs
Comparisons of microbial diversity within lab-scale and full-scale EBPR systems
Genome-resolved metagenomics of photosynthetic EBPR
Repository for assigning Accumulibacter clade designations based on ppk1 nomenclature
Course website for MICRO 551 lessons on analyzing amplicon data in R
Population dynamics at multiple scales of resolution of engineered bioreactor ecosystems
Metagenomic assembly and metatranscriptomic analysis of co-occuring Accumulibacter populations
Curated lists of resources for learning coding, bioinformatics, metagenomics, etc.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.