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pysensors's Issues

[Defect] In the case of cost_constrained_qr, the algorithm should error out if the number of sensors is larger than the number of samples

In the cost_constrained_qr algorithms, there must be an assertion or an IOError if the number of sensors is greater than the number of samples, this will cause the current implementation after the sensors exceed the number of samples (i.e., after 300 in the notebook example) will start ignoring the constrained area. Of course, this is a rare occasion, primarily since the whole idea is based on sparsity, but some users might have limited samples and might still try this.

To reproduce this issue, go to the ./examples/cost_constrained_qr.ipynb and change n_sensors to 350, you will see sensors start to be placed in the constrained areas.

Sensor Grouping

Dear team,

Firstly, many thanks for your fantastic work on SSPOC and also for providing this package. This is indeed a beneficial resource.

I am currently using PySensors to find the minimal sensors required for a classification task. However, instead of running this directly on the actual sensor count, I intend to input the extracted features and then select the number of sensors.

Specifically, I have data from 20 sensors, and I calculate 100 features/sensor. This results in a matrix with 2000 columns. In other words, the SSPOC algorithm treats this as a problem with 2000 sensors. While the 'selected_sensors' lists the particular feature that can be traced back to the corresponding sensor. I would be grateful if you could please link me to any inbuilt function for grouping the sensors or any other voting mechanism that I may use or implement?

Thanks a lot for your time.

Package Update

Is there any package update? I tried to use cross validation as your example but no 'SensorSelector' module is assigned to pysensor.

Documentation: Vandermonde Example

Dear team,

Thank you for the extensive work that has gone into this package. I wanted to try and clarify the Vandermonde example (polynomial interpolation) in the documentation so that I may better understand the functionality of this package.

  1. The basis modes refer to the number of columns in the matrix but what criteria determines the number we select? Does it refer to every possible sensor location or the regions where sensors can be placed?
  2. For the list of data defined as x, is that referring to a list of normalized values or can we input the exact values of the QoI we obtain from simulations? Similarly, is x only defined as a distance or is that just an example and we can input any kind of data?
  3. My interest with PySensors is seeing if I can find optimal sensors locations based on data I obtain from a 3D simulated model. Typically, these will not have analytical solutions to compare the reconstruction error too. Is there any other form of validation to provide confidence in where the SSPOR places the sensors?

Thank you for your time and help.

-Kennan Hodovic

Code example in README.rst is outdated

While reviewing your toolbox for JOSS I found out that the reconstruction example in the README.rst is outdated:

>>> model = pysensors.Sensorselector(n_sensors=10)
Traceback (most recent call last):
  File "<stdin>", line 1, in <module>
AttributeError: module 'pysensors' has no attribute 'Sensorselector'

I think pysensors.Sensorselector has been renamed to pysensors.reconstruction.SSPOR().

Grid search with SSPOC

Hello, as I have seen in example pysensor supports sklearn based parameters optimization. In the example, it is shown how the parameter tuning is performed for SSPOR. However, I would like to perform it for SSPOC, but for now I was unable to do so. At the end of optimization it throws me an error: ValueError: w must be a 1D vector; received a vector of dimension 0 which is implemented in pysensors\utils\_optimizers.py. Furthermore, scores which are calculated during grid search are all nan values.

I am attaching simple code snippet in case anyone could help. I hope I will not have to code grid search manually.

model_clf = LinearDiscriminantAnalysis()
model_cs = SSPOC(classifier=model_clf)

param_grid = {
    "basis": [ps.basis.Identity(), ps.basis.SVD(), ps.basis.RandomProjection()],
    "basis__n_basis_modes": [1,2,3,4,5],
    "n_sensors": [5,2,3]
}

cross_val = RepeatedStratifiedKFold(n_splits=5, n_repeats=3, random_state=1)
search = GridSearchCV(estimator = model_cs, 
                        param_grid = param_grid, 
                        scoring = "balanced_accuracy", 
                        n_jobs = -1, 
                        cv = cross_val,
                        refit = True,
                        verbose = 0,
                    )

search.fit(X_train, y_train)

print("---------------------------------------")
print("Best parameters:")
for k, v in search.best_params_.items():
    print(f"{k}:  {v}")
print("")

Multi-dimensional SSPOR

Awesome work you guys do in your research groupπŸ™ŒπŸ™ŒπŸ™Œ

I am looking into a case quite similar to what I have seen from your group - The von Karman example.

Suppose I have the von Karman example of flow past a cylinder and wish to do SSPOR based on a minimal number of sensors. The challenge in my case is that I have an additional dimension to my data. Basically, I have the spatial-temporal snapshots for a bunch of different boundary conditions (or flow points if you like) and I am looking to find the best sensor placement to reconstruct the entire transient pressure field (for a given sensor input) and not just an instance. Can pySensor handle that?

Hope it makes sense

Oversampling

Dear developer team
First of all, many thanks for the Py Sensors packages and the detailed and very clear examples! I am using SSPOR to optimize a hydrographs observation network. My data set consists of 480 sensors with 1304 features each. Now I would like to make reconstruction with more than 480 SVD basis modes (p>r). In the paper of Manohar e al (2018) I have found out that the oversampled case can be handled with ψrψrT. This should allow a maximum of 1304 basis modes?! Is there a possibility to integrate this into the SSPOR functionality?
Thanks for your help!
Marc

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