Git Product home page Git Product logo

2023_eastern_oyster_haplotig_masked_genome's Introduction

2023 Eastern Oyster Haplotig-masked Genome Repository

DOI

Repository for Puritz et al. 2023 "A second unveiling: haplotig masking of existing genomic resources improves population-level inference"

Folders above have different aspects of the analysis:

Folder Name Contents
Haplotig_Masking Contains code and outputs for the haplotig detection and masking of NCBI Assemby C_virginica-3.0 (GCF_002022765.2)
Comparative_Analysis Contains code and outputs for the comparison of population genomic statistics from both genomes

Direct link to GZIPPED FASTA file of the Haplotig-masked genome

Or simply retrieve with wget:

wget https://github.com/The-Eastern-Oyster-Genome-Project/2022_Eastern_Oyster_Haplotig_Masked_Genome/raw/main/Haplotig_Masking/Output/Masked_Genome/reference.masked.fasta.gz

2023_eastern_oyster_haplotig_masked_genome's People

Contributors

jpuritz avatar

Recommend Projects

  • React photo React

    A declarative, efficient, and flexible JavaScript library for building user interfaces.

  • Vue.js photo Vue.js

    🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.

  • Typescript photo Typescript

    TypeScript is a superset of JavaScript that compiles to clean JavaScript output.

  • TensorFlow photo TensorFlow

    An Open Source Machine Learning Framework for Everyone

  • Django photo Django

    The Web framework for perfectionists with deadlines.

  • D3 photo D3

    Bring data to life with SVG, Canvas and HTML. 📊📈🎉

Recommend Topics

  • javascript

    JavaScript (JS) is a lightweight interpreted programming language with first-class functions.

  • web

    Some thing interesting about web. New door for the world.

  • server

    A server is a program made to process requests and deliver data to clients.

  • Machine learning

    Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.

  • Game

    Some thing interesting about game, make everyone happy.

Recommend Org

  • Facebook photo Facebook

    We are working to build community through open source technology. NB: members must have two-factor auth.

  • Microsoft photo Microsoft

    Open source projects and samples from Microsoft.

  • Google photo Google

    Google ❤️ Open Source for everyone.

  • D3 photo D3

    Data-Driven Documents codes.