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2023_eastern_oyster_haplotig_masked_genome

Repository for Puritz et al. 2022 "A second unveiling: haplotig masking of existing genomic resources improves population-level inference"

adegenet

adegenet: a R package for the multivariate analysis of genetic markers

advancedpythonforbio

Work from the book 'Advanced Python for Biologists'

android-booksearch-demo

android-drawable-styles-demo

Android demo for Drawables and Styles (Week 1)

android-rottentomatoes-demo

Android networking demo for displaying Box Office Movies using the RottenTomatoes API

android-ui-templates

Download free android app templates free and paid.

applied-computational-genomics

Applied Computational Genomics Course at UU: Spring 2020

appliedgenomics2017

JHU EN.600.649: Computational Genomics: Applied Comparative Genomics

bahz

An R package for Bayesian analysis of hybrid zones

bio_594_2022

Class repo for BIO 594 Spring 2022

bioicons

A library of free open source icons for science illustrations in biology and chemistry

bioinformatics-with-python-cookbook-second-edition

Bioinformatics with Python Cookbook Second Edition, published by Packt

circlize

Circular visualization in R

comparative_genomics_nz_fish

complexheatmap

Make Complex Heatmaps

cw-advandroid

Source Code to _The Busy Coder's Guide To Advanced Android Development_

data-from-co-occurrence-pattern-and-function-prediction-of-bacterial-community-in-karst-cave

Data from Co-occurrence pattern and function prediction of bacterial community in Karst cave

ecopy

Python tools for ecological data analyses

enrichedheatmap

make enriched heatmap which visualizes the enrichment of genomic signals to specific target regions.

envrtype

Provide tools for collecting environmental data from GIS-based platforms,enabling environmental characterization studies, providing environmental relatedness kinships and kernels for genomic prediction of reaction norms

faststructure

A variational framework for inferring population structure from SNP genotype data.

fooocus

Focus on prompting and generating

formicidaemolecularevolution

Scripts and how-tos for comparative genomics work.

freebayes

Bayesian haplotype-based genetic polymorphism discovery and genotyping.

gatk-docs

Documentation archive for GATK tools and workflows

gatk4_tutorial

Clone of tutorial by Qi Yu and Wolfgang Resch

genome-scripts

Genome Scripts used in fungal comparative genomics

genome_assembly

genomebiology-2018-photoperiodlocaladaptation

Scripts for Wang et al. (2018) "A major locus controls local adaptation and adaptive life history variation in a perennial plant". Genome Biology, 19, 72.