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r-singlecell-img

Build a docker image with latest R and packages single-cell data analysis.

This image is available from: davismcc/r-singlecell-img

This repo defines an installatin of the latest version of R bootstrapping the davismcc/r-tidybioc-img (and rocker/verse and bioconductor/release_core2) docker images.

This repo adds the following packages (if not already installed in the bootstrapped images):

  • beachmat
  • Canopy
  • cardelino
  • destiny
  • edgeR
  • limma
  • MultiAssayExperiment
  • org.Hs.eg.db
  • org.Mm.eg.db
  • pcaMethods
  • Rtsne
  • scater
  • scran
  • slalom
  • vcfR

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