Name: Davis McCarthy
Type: User
Company: St Vincent's Institute of Medical Research and the University of Melbourne
Bio: Lab Head, Bioinformatics and Cellular Genomics
Location: Melbourne, Australia
Blog: https://www.svi.edu.au/research_themes/bioinformatics_and_cellular_genomics
Davis McCarthy's Projects
An archived version of the scater repository, see https://github.com/davismcc/scater for the active version.
Stickers for some Bioconductor packages - feel free to contribute and/or modify.
Handy config files
Set up files and directories for emacs
CRUK Bioinformatics Workshop September 2017
Materials for a short session on "Data Analysis in R" for EMBL predocs covering linear models and principal components analysis.
IPython notebooks, data and other required materials for the EMBL Predocs' Course on eQTL mapping in Heidelberg, November 2015.
Website for the fibroblast clonality project conducted at EMBL-EBI and the Wellcome Sanger Institute ca 2017-2019.
Python functions to help with the analysis of results from GCTA (http://www.complextraitgenomics.com/software/gcta/)
10X/SS2/spatial transcriptomics/genotyping internal cloud pipeline
Pipelines and containers
Docker definition of an image containing the latest version of R and many packages for single-cell analysis
R and more packages for single-cell data analysis
Build a docker image with latest R and packages from tidyverse, Bioconductor and friends.
Everything required to produce the 2016 scater manuscript.
A set of tutorials using the scater package to QC publicly available single-cell expression data sets
Discussion board for modifications to the scater paper
Analysis of single cell RNA-seq data course, Cambridge University, UK
Material for the single-cell methylation analysis session at EMBL's Single-Cell 'Omics course in Heidelberg, April 2017.
scRNA-seq workshop in Oxford on 9 September 2016