Comments (4)
Thank you. I agree. In the end, it will depend on the order of the lessons in the genomics workshop. In my opinion, the shell lesson shell lesson should come first and learners should be already familiar with the commands used.
Adding motivation for the setup is important and I think should be the separate issue. Can you make one?
from organization-genomics.
Sure I can make that a separate issue.
I see what you mean about order. I started looking through them in the order they are listed here. Maybe the order of the lessons overall needs to be clarified?
from organization-genomics.
Yes, please separate issue would be great :). #35
You're right about the order in the lesson overview. I think we were planning to have separate repositories connecting the lessons depending on the version of the workshop. There the lessons would be in the order they are actually taught. This is definitely something we need to know before deciding on those changes.
from organization-genomics.
Thanks for your comments @sstevens2. We've since moved the project organization episode into the shell lesson: http://www.datacarpentry.org/shell-genomics/06-organization/. This way, we can ensure that the learners have the necessary background for understanding the shell commands before diving into setting up a working directory.
from organization-genomics.
Related Issues (20)
- Typo in the common problems section HOT 4
- Combine Data Tidiness and Planning for NGS HOT 1
- Combine (and reduce) the SRA Lesson HOT 3
- clarification HOT 1
- Lesson 3 REL4541B instructions no longer work as-written HOT 1
- topic for the repository HOT 1
- Ep1 Data Tidyness Metadata Example HOT 1
- Locate the Run Selector Table for the Lenski Dataset on the SRA does not work with IE HOT 2
- _episodes/03-ncbi-sra.md NCBI SRA dowload workflow error HOT 4
- SraRunTable.txt downloads as CSV, not TSV HOT 2
- Ask about learners' science in data tidiness first discussion? HOT 3
- Some issues https://datacarpentry.org/organization-genomics/02-project-planning/index.html HOT 1
- Need jump lists (anchors) for headings HOT 1
- Standardise heading levels
- Data tidiness file download issue HOT 3
- Updates required in ‘Examining Data on the NCBI SRA Database’ HOT 2
- Suggestion for page: Project Organization and Management for Genomics: Data HOT 2
- Scheduling early transition to Workbench HOT 2
- Transition To Workbench in May HOT 25
- Links need to be fixed in CONTRIBUTING.md HOT 6
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