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mkuzak avatar mkuzak commented on May 23, 2024

Thank you. I agree. In the end, it will depend on the order of the lessons in the genomics workshop. In my opinion, the shell lesson shell lesson should come first and learners should be already familiar with the commands used.
Adding motivation for the setup is important and I think should be the separate issue. Can you make one?

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sstevens2 avatar sstevens2 commented on May 23, 2024

Sure I can make that a separate issue.

I see what you mean about order. I started looking through them in the order they are listed here. Maybe the order of the lessons overall needs to be clarified?

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mkuzak avatar mkuzak commented on May 23, 2024

Yes, please separate issue would be great :). #35
You're right about the order in the lesson overview. I think we were planning to have separate repositories connecting the lessons depending on the version of the workshop. There the lessons would be in the order they are actually taught. This is definitely something we need to know before deciding on those changes.

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ErinBecker avatar ErinBecker commented on May 23, 2024

Thanks for your comments @sstevens2. We've since moved the project organization episode into the shell lesson: http://www.datacarpentry.org/shell-genomics/06-organization/. This way, we can ensure that the learners have the necessary background for understanding the shell commands before diving into setting up a working directory.

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