Comments (2)
hoytpr
commented on June 20, 2024
Wow @achilleosk that's a great contribution. Thanks very much! This lesson will be one that constantly changes so input is appreciated. I'm going to change the 14 to 15 immediately and trim the language about the "old run selector" I will check the screenshots also. That text file has been problematic for a while so I'm going to download it and see if we can make it work. Sometimes renaming the file to ".tsv" will work.
Are you comfortable enough with Github to produce a Pull Request? If you are familiar with the SRA Toolkit, You might submit some examples as "Issues" and then after review they might make great additions to the lesson. We generally do not have extra time in workshops, but I agree it would be an important item to learn. This might be turned into an optional lesson/subject.
from organization-genomics.
hoytpr
commented on June 20, 2024
Done but will require monitoring.
from organization-genomics.
Related Issues (20)
- Typo in the common problems section HOT 4
- Combine Data Tidiness and Planning for NGS HOT 1
- Combine (and reduce) the SRA Lesson HOT 3
- clarification HOT 1
- Lesson 3 REL4541B instructions no longer work as-written HOT 1
- topic for the repository HOT 1
- Ep1 Data Tidyness Metadata Example HOT 1
- Locate the Run Selector Table for the Lenski Dataset on the SRA does not work with IE HOT 2
- _episodes/03-ncbi-sra.md NCBI SRA dowload workflow error HOT 4
- SraRunTable.txt downloads as CSV, not TSV HOT 2
- Ask about learners' science in data tidiness first discussion? HOT 3
- Some issues https://datacarpentry.org/organization-genomics/02-project-planning/index.html HOT 1
- Need jump lists (anchors) for headings HOT 1
- Standardise heading levels
- Data tidiness file download issue HOT 3
- Suggestion for page: Project Organization and Management for Genomics: Data HOT 2
- Scheduling early transition to Workbench HOT 2
- Transition To Workbench in May HOT 25
- Links need to be fixed in CONTRIBUTING.md HOT 6
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