Comments (3)
hoytpr
commented on May 25, 2024
Hi @JasonJWilliamsNY and thanks for the suggestion. "We" agree, and have a plan to work on this now, potentially by using an "extra" page where those interested can learn more about finding data on NCBI. Combining metadata collection for SRA submission is included in the plan. I'm going to put this up as a project for this repo. Thanks!
from organization-genomics.
hoytpr
commented on May 25, 2024
I'm reopening this because when it's closed it get overlooked.
from organization-genomics.
ewallace
commented on May 25, 2024
I taught this lesson this morning and I like it as-is, I don't think it's too much. Repeating the "tidiness" on the Tenaillon in Discussion 2, and then separately on the SRA submission spreadsheet helps to reinforce those lessons. Especially for a mixed group of learners, for some of whom this thinking was completely new. We skipped some optional parts but brought the lesson in at 1hr50mins including a 15min coffee break, and breakout rooms for online teaching.
from organization-genomics.
Related Issues (20)
- Typo in the common problems section HOT 4
- Combine Data Tidiness and Planning for NGS HOT 1
- clarification HOT 1
- Lesson 3 REL4541B instructions no longer work as-written HOT 1
- topic for the repository HOT 1
- Ep1 Data Tidyness Metadata Example HOT 1
- Locate the Run Selector Table for the Lenski Dataset on the SRA does not work with IE HOT 2
- _episodes/03-ncbi-sra.md NCBI SRA dowload workflow error HOT 4
- SraRunTable.txt downloads as CSV, not TSV HOT 2
- Ask about learners' science in data tidiness first discussion? HOT 3
- Some issues https://datacarpentry.org/organization-genomics/02-project-planning/index.html HOT 1
- Need jump lists (anchors) for headings HOT 1
- Standardise heading levels
- Data tidiness file download issue HOT 3
- Updates required in ‘Examining Data on the NCBI SRA Database’ HOT 2
- Suggestion for page: Project Organization and Management for Genomics: Data HOT 2
- Scheduling early transition to Workbench HOT 2
- Transition To Workbench in May HOT 25
- Links need to be fixed in CONTRIBUTING.md HOT 6
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from organization-genomics.