We need to find the file that specified required columns within the *.map files and add pert_well to that list.

deprecate this argument as it is no longer used

The column metadata for merino does not include a cell_id field. This breaks some tools for example sig_introspect. Could we add a cell_id field that mirrors the plate name? So for the CORE dataset cell_id=KJ100

cell set definitions and analyte mappings

remove this argument and have implicit naming based on LXB/CSV name
== better for data tracking

Updates to Merino outputs, changes to naming conventions and metadata:

• Update the metadata fields for cell_info.txt to match the fieldnames in
  /cmap/data/vdb/PRISM/cell_set_definitions/PRISM_PR500.CS5_definition.txt
• Save ssmd_matrix as a gct file not a table.
• Change post-ComBat files from .CB to .COMBAT
• Output a list of Level 1 plates in level1_plates_n*.grp
• Generate Level1 data tarball
• Output a pert_info file with pert_id, pert_iname, pert_type, moa, target_name, smiles

davepool_id_csv_filepath_pairs

• separate into -assay_type and -path_to_csv
• remove cell_set_definition_file and dave_pool_mapping_file arguments because these can be inferred based on the assay