Comments (5)
I've prepared an exhaustive list of words that overlap between capitalized protein names and English words. This isn't filtered for word frequency, so use with care -- aah is unlikely to appear in a biomedical text except as a protein name, but that might not be the case for cat, ape, chimp, etc.
overlap.txt
from processors.
Hi @danebell: I would like to add this list to bioresources and use it to filter out false positives in the rule-based NER. But, at this point, it seems too over-inclusive. Can you please do another pass over it, and keep just words that are likely to appear as non-proteins in bio texts? For example, I would remove the first 9 entries (they are likely to be only used as proteins), but keep ACT, ANT, etc.
from processors.
Yes, I can definitely do this, but there are over 1000 entries, so if it's okay, I will wait for at least a week to do so.
from processors.
Agreed, it can wait. I suspect that less than 10% of this are actually
relevant in this list (the rest are valid protein names that are unlikely
to be used otherwise in bio texts).
On Wed, Feb 24, 2016 at 11:03 AM, Dane Bell [email protected]
wrote:
Yes, I can definitely do this, but there are over 1000 entries, so if it's
okay, I will wait for at least a week to do so.—
Reply to this email directly or view it on GitHub
#25 (comment).
from processors.
closed by the addition of the NER stop list in bioresources 1.1.9.
from processors.
Related Issues (20)
- Normalize "grand" HOT 7
- Unreliable tests HOT 2
- The webapp messes up the project in IntelliJ HOT 3
- Preferred size of graphs is not set upon Document deserialization HOT 3
- Hashing is inconsistent HOT 2
- equivalenceHash makes use of hashCode
- pounds as measurements HOT 1
- Paths are written for Mentions that are non-arguments but not read back in
- Update dependency on scala-collection-compat HOT 1
- The Core NLP processors don't understand Easter or Mother's Day and throws an exception HOT 8
- TestLemmatizer failing with BalaurProcessor HOT 23
- Make unit tests compile without dynet HOT 4
- "Due to", the exceptional case handled in PostProcessor HOT 2
- Java interface for processors HOT 5
- Balaur tests need to pass before it can be merged into master. HOT 7
- Date rule doesn't match well with action HOT 3
- WEEK.tsv better handled in code
- Adverse effect of processors v9 on eidos HOT 5
- Quote is shoved to next sentence
- TokenPattern.assignIds never visits the start of MatchLookAhead or MatchLookBehind
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from processors.