VizCNV is an interactive tool designed to analyze and visualize CNVs from short read WGS data in rare disease research. Built on R Studio Shiny, it streamlines the identification of complex genomic rearrangements and facilitates advancements in understanding and diagnosing rare genetic conditions.
The app crash when pressing the show dnCNV button. In the Rstudio console, the error shows:
'Error in h: error in evaluating the argument 'x' in selecting a method for function 'as.data.frame': could not find function "subtract"' @clifflun Can you specify the package where the 'subtract' function coming from?
Warning: Error in filter: In argument: chrom %in% c(chr, paste0("chr", chr)).
Caused by error in h():
! error in evaluating the argument 'x' in selecting a method for function '%in%': object 'chrom' not found
I suspect it is calling the wrong reactiveValues variable
@clifflun please see the error message from docker image
Error in error_interactive: To run write_clip() in non-interactive mode, either call write_clip() with allow_non_interactive = TRUE, or set the environment variable CLIPR_ALLOW=TRUE