cluhaowie / vizcnv Goto Github PK

@cluhaowie

Warning: Error in filter: In argument: chrom %in% c(chr, paste0("chr", chr)).
Caused by error in h():
! error in evaluating the argument 'x' in selecting a method for function '%in%': object 'chrom' not found

I suspect it is calling the wrong reactiveValues variable

This issue may be related to the mac user. Here is the potential solution
https://www.cynkra.com/blog/2021-03-16-gfortran-macos/

@clifflun please see the error message from docker image
Error in error_interactive: To run write_clip() in non-interactive mode, either call write_clip() with allow_non_interactive = TRUE, or set the environment variable CLIPR_ALLOW=TRUE

@cluhaowie, I encountered this error when trying to annotate using hg19, the file is not found in /data dir

Failed to open local file 'Z:/clun/git/VizCNV/data/hg19_ucsc_sugdups.parguet'

please upload the parquet file and fix typos

wg view - labels (done)
chr view - labels, chr instruc (done)
tables - omim disease (todo)

t2t- refseq, link to ucsc (done

@cluhaowie title

The app crash when pressing the show dnCNV button. In the Rstudio console, the error shows:
'Error in h: error in evaluating the argument 'x' in selecting a method for function 'as.data.frame': could not find function "subtract"'
@clifflun Can you specify the package where the 'subtract' function coming from?