cbiit / misteli-lab-ccr-nci Goto Github PK

Collection of KNIME workflows, statistical analysis scripts (.Rmd), (primary/secondary) data used in publications by Misteli Lab

KNIME (version 3.2.1) Image Analysis Workflows, R markdown scripts, and secondary data for Jowhar et. al., 2018.

R scripts with (secondary) data and KNIME (version 3.2.1) workflows for Gudla et. al., CSH SQB, 2017.

R scripts with (secondary) data and KNIME (version 3.2.1) workflows for Jowhar et. al., Methods, 2018.

Jowhar_SCA_2018: Jowhar et. al., "Effects of Human Sex Chromosome Dosage on Spatial Chromosome Organization". Submitted to Molecular Biology of the Cell. Also at bioRxiv: 10.1101/346742.

Jowhar_Methods_2017: Jowhar et. al., "HiCTMap: Detection and Analysis of Chromosome Territory Structure and Position by High-throughput Imaging". Methods. 2018 Jun 1;142:30-38. doi: 10.1016/j.ymeth.2018.01.013. Epub 2018 Feb 10. Also at bioRxiv 185942.

Gudla_CSH_2017: Gudla et. al., "SpotLearn: Convolutional Neural Network for Detection of Fluorescence In Situ Hybridization (FISH) Signals in High-Throughput Imaging Approaches". Cold Spring Harb Symp Quant Biol. 2017 Nov 28. pii: 033761. doi: 10.1101/sqb.2017.82.033761.

Tom Misteli, Ph.D. [email protected]

Director, Center for Cancer Research
NIH Distinguished Investigator
Head, Cell Biology of Genomes Group
Laboratory of Receptor Biology and Gene Expression
Center for Cancer Research
National Cancer Institute
National Institues of Health, Bethesda, MD, USA 20892