brinkmanlab / islandcompare-cli Goto Github PK
View Code? Open in Web Editor NEWIslandCompare Command Line Interface
License: Other
IslandCompare Command Line Interface
License: Other
First I would like to congratulate you for the great work on IslandCompare. For sure the results generated by the application will contribute a lot to the scientific community. I would like your help, to understand a possible mistake when I'm trying to run locally.
As per the instructions, I tried to run it with the following arguments described below. None of them were successful, always with ERROR: Invalid dataset path specified. What would be the correct arguments to run locally?
-h
usage: islandcompare.py upload_run [-h] [-r REFERENCE_ID] [-a NEWICK_PATH | -l NEWICK_PATH] analysis_label path [path ...] output_path
https://github.com/brinkmanlab/islandcompare-cli
./islandcompare.py --key MYAPIKEY upload_run 'Analysis label' ./path/to/data/*.gbk ./output/
./islandcompare.py --key XXX upload_run analysis_label ./home/islandcompare/data/*.gbk ./home/islandcompare/output
./islandcompare.py --key XXX upload_run analysis_label /home/islandcompare/data/*.gbk /home/islandcompare/output
./islandcompare.py --key XXX upload_run analysis_label path /home/islandcompare/data/*.gbk output_path /home/islandcompare/output
./islandcompare.py --key XXX upload_run analysis_label path ./home/islandcompare/data/*.gbk output_path ./home/islandcompare/output
./islandcompare.py --key XXX upload_run analysis_label path [/home/islandcompare/data/*.gbk] output_path /home/islandcompare/output
./islandcompare.py --key XXX upload_run analysis_label path [/home/islandcompare/data/*.gbk] output_path ./home/islandcompare/output
Best regards.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
๐ Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. ๐๐๐
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google โค๏ธ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.