brinkmanlab / islandcompare-cli Goto Github PK

First I would like to congratulate you for the great work on IslandCompare. For sure the results generated by the application will contribute a lot to the scientific community. I would like your help, to understand a possible mistake when I'm trying to run locally.

As per the instructions, I tried to run it with the following arguments described below. None of them were successful, always with ERROR: Invalid dataset path specified. What would be the correct arguments to run locally?

-h
usage: islandcompare.py upload_run [-h] [-r REFERENCE_ID] [-a NEWICK_PATH | -l NEWICK_PATH] analysis_label path [path ...] output_path

https://github.com/brinkmanlab/islandcompare-cli
./islandcompare.py --key MYAPIKEY upload_run 'Analysis label' ./path/to/data/*.gbk ./output/

./islandcompare.py --key XXX upload_run analysis_label ./home/islandcompare/data/*.gbk ./home/islandcompare/output

./islandcompare.py --key XXX upload_run analysis_label /home/islandcompare/data/*.gbk /home/islandcompare/output

./islandcompare.py --key XXX upload_run analysis_label path /home/islandcompare/data/*.gbk output_path /home/islandcompare/output

./islandcompare.py --key XXX upload_run analysis_label path ./home/islandcompare/data/*.gbk output_path ./home/islandcompare/output

./islandcompare.py --key XXX upload_run analysis_label path [/home/islandcompare/data/*.gbk] output_path /home/islandcompare/output

./islandcompare.py --key XXX upload_run analysis_label path [/home/islandcompare/data/*.gbk] output_path ./home/islandcompare/output

Best regards.