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ansible-galaxy-extras

Ansible roles to configure assorted compontents for an Ubuntu VM or container configured with https://github.com/galaxyproject/ansible-galaxy with production services including nginx, uwsgi, supervisor, protftp, and slurm.

bioblend

A Python library for interacting with CloudMan and Galaxy API

bioconda-recipes

Conda recipes for the bioconda channel.

biopython

Official git repository for Biopython (originally converted from CVS)

biopython-convert

Tool to interconvert between various bioinformatics formats that BioPython supports

blend4go

Galaxy API client library for Golang

chewbbaca-galaxy

Galaxy wrapper for the chewBBACA BSR-Based Allele Calling Algorithm

cloud_recipes

Kubernetes deployment recipies for various third party cloud providers

cloudflare-worker-local

Run a Cloudflare Worker Locally

colombo

Repo for conda Colombo install

curated_gis

Curated database of labelled Genomic Islands found in publications

cvmfs-csi

docker-galaxy-stable

:whale::bar_chart::books: Docker Images tracking the stable Galaxy releases.

feature_merge

Merge features in GFF files

flowcraft_innuendo

A Nextflow pipeline assembler for genomics :whale::package:

galaxy

Data intensive science for everyone.

galaxy-client

Galaxy web api client library

galaxy-container

Galaxy container generation and cloud deployment recipes. Uses Buildah, Ansible, and Terraform.

galaxy-tools

Central repo for all brinkman maintained Galaxy Tools

genomed3plot

SVG based genome viewer written in javascript using D3

gffutils

GFF and GTF file manipulation and interconversion

gi_predictor_assessment

Scripts to evaluate software for GI prediction

globecorr

irida

Canada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology

irida-container

Deploy IRIDA locally using docker or to a major Cloud provider

irida-plugin-amr-detection

IRIDA Plugin for AMR Detection

irida-plugin-chewbbaca

irida-plugin-islandviewer

IslandViewer genomic island prediction pipeline implemented as a plugin for IRIDA

irida-plugin-mentalist

islandcompare

Pipeline for detecting and annotating genomic islands and relationships between the respective genomes