This project contains the IslandViewer genomic island prediction pipeline implemented as a plugin for the IRIDA bioinformatics analysis system.

This code is based on the update-example branch of the irida-example-plugin at the National Microbiology Laboratory GitHub page. If you are interested in using a template for implementing your own pipelines within IRIDA, please visit the Example Plugin page or view the pipeline documentation at https://irida.corefacility.ca/documentation/developer/tools/pipelines/ for more details.

If you are interested in using this pipeline in your IRIDA installation, copy the latest islandviewerclient-plugin-<VERSION>.jar release to /etc/irida/plugins/ and restart both tomcat and the galaxy server.