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cov-kge's Introduction

Requirement

python
pandas

Data preprocessing

1.gnbr

original gnbr datasets V7:https://zenodo.org/record/1035500#.XlcypZgzZPY
Treat chemical_disease, gene_disease, gene_gene, gene_disease triples and entities separately
concat.py:Merge all entities and triples

2.drugbank

drugbank.py:Merge the drugbank data set with the gnbr data set (unzip drugbank/drugbank.zip first)

Train

We used the knowledge graph embedding model Rotate in the DGL framework
https://github.com/dmlc/dgl/tree/master/apps/kg

cov-kge's People

Contributors

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