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aac_scoring

Map DEXA images from UKBB dataset to abdominal aortic calcification scores

alphafold_pytorch

An implementation of the DeepMind's AlphaFold based on PyTorch for research

anatomy_of_a_heater

Understanding techno at the molecular level

atxsatscan

Determining COVID-19 case burden from discrete Poisson spatial scan statistic

audiocraft

Audiocraft is a library for audio processing and generation with deep learning. It features the state-of-the-art EnCodec audio compressor / tokenizer, along with MusicGen, a simple and controllable music generation LM with textual and melodic conditioning.

biobank-self-supervised-alignment

Code for MICCAI 2021 submission 'Self-Supervised Multi-Modal Alignment For Whole Body Medical Imaging'

biopopwork

fast bioinformatic workflow for population genomics

cellxgene-manuscript-2023

Code and data to reproduce analyses in the 2023 cellxgene manuscript

cellxgene_handlers

Utility scripts for processing high dimensional data from the CZI CELLxGENE dataset

concrete-ml

Concrete ML: Privacy Preserving ML framework built on top of Concrete, with bindings to traditional ML frameworks.

cov-kge

covid19_critically_ill

Trained model and inference code for early triage of critically-ill COVID-19 patients.

deeppurpose

A Drug-Target Interaction Prediction Toolkit with State-of-the-Art Deep Learning Methods and its Applications in Drug Repurposing and Virtual Screening

deepsurv

DeepSurv is a deep learning approach to survival analysis.

dgl-lifesci

Python package for graph neural networks in chemistry and biology

dl-pytorch-notes

Notes from diving deep into PyTorch for Deep Learning: General Concepts with Code

dxaconv

Convert DICOM files from DXA scans to other image formats, and parse the corresponding metadata files

eda

Generalizable exploratory data analysis pipeline

fastbook

The fastai book, published as Jupyter Notebooks

gamodel

Class for generalized linear model

genevector

Vector representations of gene co-expression in single cell RNAseq.

gpt-engineer

Specify what you want it to build, the AI asks for clarification, and then builds it.

hare

Human Accelerated Region Enrichment (HARE) Evolutionary Analysis Pipeline

hlca_reproducibility

This repository contains all code used for the Human Lung Cell Atlas project.

homomorphic_encryption_libs

✨ Awesome - A curated list of amazing Homomorphic Encryption libraries, software and resources

jax-rnafold

jeiden

Vectorized JAX implementation of the Leiden algorithm for community detection

m-net

M-NET model for deep brain structure segmentation

multi-page-app

mx_composition

An algorithmic music composition package based in part on the author's Common Music and Grace systems.