Comments (3)
And also this excellent training material from BioConductor.
from googlegenomics.
A minimal example has been added https://github.com/googlegenomics/api-client-r/blob/master/inst/doc/VariantAnnotation-comparison-test.md
from googlegenomics.
Looks really nice Nicole!
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Related Issues (20)
- genome reference assembly extraction from variants/reads objects? HOT 4
- seqlevelsStyle oddities HOT 10
- improve performance HOT 8
- coding style HOT 19
- getting started confusion HOT 13
- Example code motivating seqlevelsStyle() patch HOT 1
- Improve messaging and instructions around authentication. HOT 4
- add retrying to all api methods
- streamline authorization HOT 1
- submit this package to BioConductor HOT 3
- Problem authenticating with invokeBrowser=F HOT 2
- Error [...] key 60 (char '<') not in lookup table HOT 4
- Document steps for new package releases HOT 4
- Port to native R support in Travis. HOT 19
- Might want to update to the new location... HOT 2
- Update Bioconductor converters to handle multi-allelic data and data with non-variant segments.
- Update Bioconductor variant converters to tolerate missing values.
- Update getVariants* calls to accept a variantSetId instead of datasetId HOT 1
- Add a method to reset the OAuth token. HOT 7
- variantsToVRanges loses sample/call information HOT 4
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