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analysis-py-utils

Python utilities for BigQuery analyses.

api-client-android

A sample Android app that calls the Google Genomics API.

api-client-java

Provides a command line interface for API queries in Java.

api-provider-local-java

An implementation of the Global Alliance Reads API which reads data from local BAM files.

bigquery-examples

Example BigQuery integrations. Includes both sql and R wrappers.

bigrquery

An interface to Google's BigQuery from R.

bioc2015workshop

GoogleGenomics workshop for Bioc2015 packaged up into a vignettes-only R package.

bioconductor-workshop-r

R package containing instructional materials for using GoogleGenomics Bioconductor and bigrquery packages.

catterplot

Did you ever wish you could make scatter plots with cat shaped points? Now you can!

catterplotpy

A tool for creating catterplots in Python with matplotlib

cellprofiler-on-terra

Run CellProfiler on Terra

cloudml-examples

Examples of using CloudML with genomic data.

dataflow-java

Provides several Google Cloud Dataflow pipeline examples as well as useful utility classes.

datalab

Interactive tools and developer experiences for Big Data on Google Cloud Platform.

datalab-examples

Example Cloud Datalab iPython Notebooks for genomics use cases.

datasets

Images and other data from the JUMP Cell Painting Consortium

deflaux.github.io

denovo-variant-caller-java

A de novo variant caller which uses information from a mother, father and child trio with a bayesian inference method.

dsub

Open-source command-line tool to run batch computing tasks and workflows on backend services such as Google Cloud.

embedder

Computing per-cell embeddings for all jump-cp data.

examples-python

Analysis examples based on the ISB-CGC hosted TCGA data, using Python and IPython Notebooks.

examples-r

Analysis examples based on the ISB-CGC hosted TCGA data, using R and R Markdown.

galaxy-tooldev-docs

gatk-tools-java

Tools for using Picard and GATK with the Google Genomics API.

gce-images

Scripts that create a Google Compute Engine image containing a set of popular genomics software.

genomewarp

getting-started-bigquery

Examples of how to get started with genomics data in BigQuery in many languages.

getting-started-with-the-api

Examples of how to get started with the Google Genomics API in many languages.

googlegenomics

Provides a simple R script that transforms API query results into GAlignments.

googva