Comments (4)
from googlegenomics.
Thanks Tim -- Let's be in touch before writing any code as there are some issues to think about regarding when to acquire the detailed data -- working directly with the JSON response or elaborating the current getVariants code ...
from googlegenomics.
Hello Vince,
Thank you for your query. This package has not been updated in a while, mostly due to personal time considerations on my part, but we do intend to keep supporting it.
If you have a patch you would like me to review, I will be very grateful. Please read https://github.com/Bioconductor/GoogleGenomics/blob/master/CONTRIBUTING.rst before you start working on the patch.
Else, I will be happy to work on your suggestion in my next set of updates.
from googlegenomics.
This has been fixed by contributions from Vincent Carey and his team in pull requests #54 and #55. The changes are also available in the bioc-devel repository.
from googlegenomics.
Related Issues (20)
- genome reference assembly extraction from variants/reads objects? HOT 4
- seqlevelsStyle oddities HOT 10
- improve performance HOT 8
- coding style HOT 19
- getting started confusion HOT 13
- Example code motivating seqlevelsStyle() patch HOT 1
- Improve messaging and instructions around authentication. HOT 4
- add retrying to all api methods
- streamline authorization HOT 1
- submit this package to BioConductor HOT 3
- Problem authenticating with invokeBrowser=F HOT 2
- Error [...] key 60 (char '<') not in lookup table HOT 4
- Document steps for new package releases HOT 4
- Port to native R support in Travis. HOT 19
- Might want to update to the new location... HOT 2
- Update Bioconductor converters to handle multi-allelic data and data with non-variant segments.
- Update Bioconductor variant converters to tolerate missing values.
- Update getVariants* calls to accept a variantSetId instead of datasetId HOT 1
- Add a method to reset the OAuth token. HOT 7
Recommend Projects
-
React
A declarative, efficient, and flexible JavaScript library for building user interfaces.
-
Vue.js
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
-
Typescript
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
-
TensorFlow
An Open Source Machine Learning Framework for Everyone
-
Django
The Web framework for perfectionists with deadlines.
-
Laravel
A PHP framework for web artisans
-
D3
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
-
Recommend Topics
-
javascript
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
-
web
Some thing interesting about web. New door for the world.
-
server
A server is a program made to process requests and deliver data to clients.
-
Machine learning
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
-
Visualization
Some thing interesting about visualization, use data art
-
Game
Some thing interesting about game, make everyone happy.
Recommend Org
-
Facebook
We are working to build community through open source technology. NB: members must have two-factor auth.
-
Microsoft
Open source projects and samples from Microsoft.
-
Google
Google ❤️ Open Source for everyone.
-
Alibaba
Alibaba Open Source for everyone
-
D3
Data-Driven Documents codes.
-
Tencent
China tencent open source team.
from googlegenomics.