bharatm26 Goto Github PK
Name: Bharat Mishra, PhD
Type: User
Company: UAB_BDS
Bio: Integrative multi-omics, Network Biology, Bioinformatics.
Twitter: Bharat26oct
Location: Birmingham, AL, USA
Name: Bharat Mishra, PhD
Type: User
Company: UAB_BDS
Bio: Integrative multi-omics, Network Biology, Bioinformatics.
Twitter: Bharat26oct
Location: Birmingham, AL, USA
2D Spot plot
AUCell: score single cells with gene regulatory networks
Community-curated list of software packages and data resources for single-cell, including RNA-seq, ATAC-seq, etc.
A Shiny web app for mapping datasets using Seurat v4
a spatial deconvolution method based on deep learning frameworks, which converts bulk transcriptomes into spatially resolved single-cell expression profiles
Workshop materials for the U-BDS bulk RNA-seq lessons
BulkSignalR
Evaluation of cell-cell interaction methods by integrating single-cell RNA sequencing data with spatial information
A Coupled-Clone Nonnegative Matrix Factorization Method for Integrating Tumor Single-Cell RNA and DNA Sequencing Data
R toolkit for inference, visualization and analysis of cell-cell communication from single-cell data
📊 Circular and Rectangular Manhattan Plot
A library for creating complex UpSet plots with ggplot2 geoms
Config files used to define parameters specific to compute environments at different Institutions
Bioinformatics containers
predict and compare scRNA/snRNA Seq doublets by three methods
Easy & parallel download of FASTQ files from public repositories (SRA, EGA, GDC)
Publication-ready volcano plots with enhanced colouring and labeling
Using self-organizing maps for visualization and interpretation of cytometry data
R package; Human genome partitioning of dense sequencing data by identifying haplotype blocks
High dimensional weighted gene co-expression network analysis
A unified interface to immune deconvolution methods (CIBERSORT, EPIC, quanTIseq, TIMER, xCell, MCPcounter) and mouse deconvolution methods
Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.
Single Cell Population Genetics and Association Analysis Tool
Multi-omic velocity inference
NicheNet: predict active ligand-target links between interacting cells
python module to plot beautiful and highly customizable genome browser tracks
RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.
A declarative, efficient, and flexible JavaScript library for building user interfaces.
🖖 Vue.js is a progressive, incrementally-adoptable JavaScript framework for building UI on the web.
TypeScript is a superset of JavaScript that compiles to clean JavaScript output.
An Open Source Machine Learning Framework for Everyone
The Web framework for perfectionists with deadlines.
A PHP framework for web artisans
Bring data to life with SVG, Canvas and HTML. 📊📈🎉
JavaScript (JS) is a lightweight interpreted programming language with first-class functions.
Some thing interesting about web. New door for the world.
A server is a program made to process requests and deliver data to clients.
Machine learning is a way of modeling and interpreting data that allows a piece of software to respond intelligently.
Some thing interesting about visualization, use data art
Some thing interesting about game, make everyone happy.
We are working to build community through open source technology. NB: members must have two-factor auth.
Open source projects and samples from Microsoft.
Google ❤️ Open Source for everyone.
Alibaba Open Source for everyone
Data-Driven Documents codes.
China tencent open source team.