This repo includes use of three different doublet prediction approches Chord
, DoubletFinder
, and scDblFinder
using SCT
and RNA
assays in single sample (NOT INTEGRATED). After different comparisions of SCT assay doublets, it was noted that the predicted doublets were not consistent among DoubletFinder
, and scDblFinder
. We proceeded with RNA
assay for doublet prediction. Further, it was noted that Chord
utilizes DoubletFinder
, cxds
, and bcds
to improve the doublet prediction.
Links:
Chord: https://github.com/13308204545/Chord
scDblFinder: https://github.com/plger/scDblFinder
DoubletFinder: https://github.com/chris-mcginnis-ucsf/DoubletFinder
The Input data for this analysis is at: /data/project/U_BDS/pipeline_dev_space/sample_runs_data/scRNA-seq/secondary_analysis_outputs